Exercises
As a hands-on practical course, we will introduce many exercises to be
practiced during the course. This page collects a variety of exercises such
as literature search, database query, and database search, sequence alignment,
motif search, phylogenetic analysis and molecular modeling.
Exercises in class
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PubMed
- Literature search with PubMed and database query with
the NCBI Entrez system.
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Align
- Pairwise and multiple sequence alignment using both local and global algorithms.
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UniProt
- Find protein sequences from the UniProt/Swiss-Prot database and browse the entries.
[Exercise3A]
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BLAST
-Sequence similarity search against DNA and protein sequence databases.
[Exercise4A]
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Phylogeny
- Phylogenetic analysis and construction of phylogenetic tress with simple examples.
[Exercise5A]
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3D Analysis
- Analysis of three-dimensional structure of proteins.
[Exercise6A]
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3D Prediction
- Prediction of protein structure.
[Exercise7A]
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DNA
- Analysis of DNA sequences with several bioinformatics tools.
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Protein
- Analysis of protein sequences with several bioinformatics tools.
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Motif
- Identification of conserved sequence motifs and domains.
Exercises for CAAS20MS3-4 students
Semester summary
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CAASMS1_S
- Outline of semester summary for CAAS20MS1 students.
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CAASMS2_S
- Outline of semester summary for CAAS20MS2 students.
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CAASPhD_S
- Outline of semester summary for CAAS20PhD students.
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PKU20_S
- Outline of semester summary for PKU20 students.