Applied Bioinformatics Course

jcl

Jingchu Luo

Jingchu Luo is a professor at the College for Life Sciences, Peking University. He is the China node manager of the European Molecular Biology Network (EMBnet). He spent one and half year at the University of Maryland as a visiting scholar in 1987-1989, and carried out part time collaborative research at the Cancer Research UK during 1991-1999. Together with Professor Xiaocheng Gu, he started the Center for Bioinformatics (CBI) at Peking University in 1997. His main research focus is comparative plant genomics, transcriptional regulation in plants, development of bioinformatics platforms and construction of bioinformatics databases. He is the editorial member of BMC Bioinformatics and Briefings of Bioinformatics. He was invited to give lectures at dozens international and domestic bioinformatics conferences, and is a program committee member of several international bioinformatics conferences. He has been running the Applied Bioinformatics Course (ABC) and organized several international and national workshops and training courses during the past 15 years. [Chinese]

Research

Selected Publications (Full list]

  1. Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, Luo J. (2011) PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res. 39:D1114-7. [PDF]
  2. Liu X, Li Z, Jiang Z, Zhao Y, Peng J, Jin J, Guo H, Luo J. (2011) LSD: a leaf senescence database. Nucleic Acids Res. 39:D1103-7.[PDF].
  3. He K, Guo AY, Gao G, Zhu QH, Liu XC, Zhang H, Chen X, Gu X, Luo J. (2010) Computational identification of plant transcription factors and the construction of the PlantTFDB database. Methods Mol Biol. 674:351-68. [PDF].
  4. Wang J, Kong L, Zhao S, Zhang H, Tang L, Li Z, Gu X, Luo J, Gao G. (2011) Rice-Map: a new-generation rice genome browser. BMC Genomics. 12:165. [PDF]
  5. He K, Li X, Zhou J, Deng XW, Zhao H, Luo J. (2009) NTAP: for NimbleGen tiling array ChIP-chip data analysis. Bioinformatics. 25:1838-40. [PDF]
  6. Liu X, Wu J, Wang J, Liu X, Zhao S, Li Z, Kong L, Gu X, Luo J, Gao G. (2009) WebLab: a data-centric, knowledge-sharing bioinformatic platform. Nucleic Acids Res. 37:W33-9. [PDF]
  7. Li Z, Zhang H, Ge S, Gu X, Gao G, Luo J. (2009) Expression pattern divergence of duplicated genes in rice. BMC Bioinformatics. 10(Suppl 6):S8. [PDF]
  8. Guo AY, Zhu QH, Gu X, Ge S, Yang J, Luo J. (2008) Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family. Gene. 418:1-8. [PDF]
  9. Guo AY, Chen X, Gao G, Zhang H, Zhu QH, Liu XC, Zhong YF, Gu X, He K, Luo J. (2008) PlantTFDB: a comprehensive plant transcription factor database. Nucleic Acids Res. 36:D966-9. [PDF]
  10. Zhu QH, Guo AY, Gao G, Zhong YF, Xu M, Huang M, Luo J. (2007) DPTF: a database of poplar transcription factors. Bioinformatics. 23:1307-8. [PDF]
  11. Sun Y, Zhao S, Yu H, Gao G, Luo J. (2007) ABCGrid: Application for Bioinformatics Computing Grid. Bioinformatics. 23:1175-7. [PDF]
  12. Wang X, Shi X, Li Z, Zhu Q, Kong L, Tang W, Ge S, Luo J. (2006) Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice. BMC Bioinformatics. 7:447. [PDF]
  13. Shi X, Wang X, Li Z, Zhu Q, Tang W, Ge S, Luo J. (2006) Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias. Gene. 376:199-206. [PDF]
  14. Wu J, Mao X, Cai T, Luo J, Wei L. (2006) KOBAS server: a web-based platform for automated annotation and pathway identification. Nucleic Acids Res. 34:W720-4. [PDF]
  15. Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J. (2006) DRTF: a database of rice transcription factors. Bioinformatics. 22:1286-7. [PDF]
  16. Wu X, Walker MG, Luo J, Wei L. (2005) GBA server: EST-based digital gene expression profiling. Nucleic Acids Res. 33:W673-6. [PDF]
  17. Wang X, Shi X, Hao B, Ge S, Luo J. (2005) Duplication and DNA segmental loss in the rice genome: implications for diploidization. New Phytol. 165:937-46. [PDF]
  18. Chen Y, Zhang Y, Yin Y, Gao G, Li S, Jiang Y, Gu X, Luo J. (2005) SPD--a web-based secreted protein database. Nucleic Acids Res. 33:D169-73. [PDF]
  19. Guo A, He K, Liu D, Bai S, Gu X, Wei L, Luo J. (2005) DATF: a database of Arabidopsis transcription factors. Bioinformatics 21:2568-9. [PDF]
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31 Mar 2012, J Luo, CBI, PKU, Beijing, China