Applied Bioinformatics Course

Sequence alignment

Pairwise and multiple sequence alignment using both local and global algorithms.

Pairwise sequence alignment

Use Needle and Water to align the following sequence pairs with different scoring matrix and gap penalty, compare the results:

Use Needle to align the following three sequences between each other, make a summary of your analysis results with Table 1 of ABC Example

Use Needle and Water to align the following sequence pairs with different scoring matrix and gap penalty, compare the results:

Multiple sequence alignment

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22 November 2017, J Luo, CBI, PKU, Beijing, China