Phylogeny
Phylogenetic analysis and construction of phylogenetic tress with simple examples.
Globin
- Construct a phylogentic tree for 12 human globins (PDF) [12 Globins]
- Construct a phylogentic tree for the coding sequence of 13 human globins (PDF) [13 Human Globin CDS]
- Construct a phylogentic tree for the alpha hemoglobins from 7 representative vertabrates (Evolution 101) (PDF) [7HBA]
- Construct a phylogenetic tree for the coding sequence of alpha hemoglobins from 7 representative vertebrates (Evolution 101) (PDF) [7HBA CDS]
- Construct a phylogentic tree for 37 human, mouse and rat globin coding sequences (ABC Example) (PDF) [37 GLOBIN_CDS]
- Construct phylogentic trees selecting interested sequences from 208HBA based on the taxonomy table [208HBA.pdf]
SBP-like (SPL) Transcription Factors
- Construct a phylogentic tree for the full length of 17 Arabidopsis SBP proteins [17AtSPL]
- Construct a phylogentic tree for the DNA binding domain of 17 Arabidopsis SBP proteins [17AtSPLD]
- Construct a phylogenetic tree for the full length of 17 AtSPL and 19 OsSPL proteins [36AtOsSPL]
- Construct a phylogenetic tree for the DNA binding domain of 17 AtSPL and 19 OsSPL proteins [36AtOsSPLD]