BLAST
Sequence similarity search against DNA and protein sequence databases.
Online BLAST
- Search a virtual peptide sequence (ACDEFGHI) against the NCBI NR
database.
- Search a virtual random peptide sequence (ADIMWQVRSFCYLGHTKEPN) against
the NCBI NR database
- Search a virtual DNA sequence (ACGTACGTACGTACGTACGT) against the NCBI
NR database
- Search the delta sleep-inducing peptide
DSIP_RABIT
against the NCBI NR database.
- Search PPF-1 protein sequence
PPF1_PEA
against the Swiss-Prot database.
- Search the rice histidine transporter
Q85V22_ORYSI
against the NCBI plants database.
- Search the rice histidine transporter
Q85V22_ORYSI
against the NCBI NR database.
- Search the universal stress protein
Y577_METJA
against the NCBI NR database.
- Search the SAP domain-containing ribonucleoprotein
SARNP_HUMAN
against the NCBI NR database
- Search olfactory receptor protein
OR6C1_HUMAN
against the NCBI NR database
Local BLAST
- Construct a local Blast database with hemoglobin alpha subunit protein
sequences retrieved from Swiss-Prot and do Blast search locally with a
query sequence
209 HBA
- Build local BLAST database for maize transcription factors
ZMTF CDS
and
ZMTF PEP
- Make BLASTN search to find SBP TFs in maize using Arabidopsis SPL3
coding sequence
SPL3 CDS
- Make BLASTP search to find SBP TFs in maize using Arabidopsis SPL3 protein
sequence
SPL3 PEP