Grail analysis result for 24001-39951)
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[grail1exons -> Exons]
Str Frm Start End ORFstart ORFend Score Quality
1- f 2 121 171 87 263 3.370 good
2- f 2 571 681 546 689 9.033 excellent
3- f 0 988 1121 991 1221 10.517 excellent
4- f 0 1261 1378 1222 1380 6.345 excellent
5- f 1 2311 2341 2093 2344 1.376 marginal
6- f 1 3071 3121 3041 3187 2.091 good
7- f 1 7391 7401 7376 7558 1.447 marginal
8- f 2 8471 8761 8322 9164 11.971 excellent
9- f 0 11591 11621 11515 11751 1.063 marginal
10- f 2 11952 12021 11955 12098 8.551 excellent
11- f 0 12241 12271 12226 12333 2.548 good
12- r 1 15111 15221 15032 15223 8.078 excellent
13- r 2 14731 14781 14640 15008 4.026 good
14- r 2 14307 14461 14310 14561 10.917 excellent
15- r 2 14161 14251 14130 14309 8.326 excellent
16- r 2 13991 14081 13920 14108 7.149 excellent
17- r 0 13851 13931 13801 14022 4.011 good
18- r 2 13661 13725 13488 13727 7.906 excellent
19- r 0 12691 12771 12589 12816 5.200 excellent
20- r 1 12191 12231 12137 12295 3.131 good
21- r 1 11301 11351 11267 11407 1.893 marginal
22- r 1 9931 9971 9887 9985 3.164 good
23- r 0 9391 9491 9346 9630 7.732 excellent
24- r 2 6141 6161 6093 6176 1.516 marginal
25- r 1 4871 4971 4679 5023 3.870 good
26- r 2 4171 4231 3681 4235 3.424 good
27- r 2 3761 3861 3681 4235 8.497 excellent
28- r 1 3631 3631 3482 3796 0.565 marginal
29- r 2 3249 3441 3252 3473 14.707 excellent
30- r 0 3101 3191 3025 3330 7.163 excellent
31- r 1 2691 2811 2441 2890 7.783 excellent
32- r 0 2521 2605 2407 2607 8.600 excellent
33- r 0 2291 2391 2242 2406 8.731 excellent
34- r 2 2064 2121 2067 2291 2.590 good
35- r 2 1671 1761 1632 1898 6.309 excellent
36- r 2 933 991 936 1010 2.499 good
37- r 0 401 461 340 483 5.521 excellent
[grail1exons -> Exon Translations]
38- NVTNKASIHDRTSKMER
39- SCRQLLKTLNRDTASVWRQDFQADMEITILRVKVQSG
40- EEFRNRTSLLFGDEIQAEKVPVEACTGESDDVTGNIRTPFSPL
41- PSSPPTAASQHTSHDGSVMAVHHFTASTVQGLMVSVLPW
42- DGLVVRINT
43- GKGTSPRALSQNDEME
44- SLK
45- SPLPQEDMHFILNTLKENFVSIGLVKKEPKVFRPWRKKKKQEAAQSQDSD
LQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALERNELKLLLV
46- RPPPHEEEEE
47- GTLLLKDEADLKGNHGWSEQKH
48- TRSEPPRRDE
49- LSSSLVGYTTVLGAVAPMVPHGYGFFYRIREDRWAY
50- AKRKAMQLAFEKHNNLM
51- QPSVVQAQDLQVVCYAFTAFGKAAIKQKKLHPDTFIQLAMQLAYFKLHQR
52- VRVLPPPEELVFTVDEKVRSDIGRAKKQYF
53- QHAPYDAMVLVTMCWYVDQRIQSTGGKWKV
54- DKSYNSVVYSDGTFGSNCDVSCDAPG
55- SLFTICLDETQPYSTPENYTNV
56- LDMDQFRMLYCTCKVPGVTKDAIRSY
57- ATEDIVRNFQQGV
58- NLLLSFKRLKFRINQN
59- MSDYINLGNEVIS
60- AEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAI
61- TVCLQM
62- QTNSKVSAADVTKSRRAASDGREKVTVNDSARD
63- AGRGGDNSSIINILNVKSCY
64- FDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYN
65-
66- STKTPGLRPMERRDIRQVTELLQKFLKRFQLAPSMTEEEVSHWFLPQDNI
IDTYVVEVAGISL
67- VKFSHLSRNMTLQRTMKLYRLPDVSSTNLT
68- RVKRMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGI
69- HCGVRVSSNKKLVGFISAIPADIRIYDT
70- NECCLLQLKELYTLLNENYVEDDDNMFRFDYSP
71- DCAIVPDEVVTSHGPIEA
72- RAMELLSCQGPAKSIDEAAKHKYQFWDTQP
[End trananslation]
[Start translation]
[trans_start= 14730]
AKRKAMQLAFEKHNNLM
73- QPSVVQAQDLQVVCYAFTAFGKAAIKQKKLHPDTFIQLAMQLAYFKLHQR
74- KEEEETEEEEREAEFGGS
75- QQSLELDDQDTCGIDGDNEE
[grail1aexons -> Exons]
Str Frm Start End ORFstart ORFend Score Quality
76- f 1 7200 7260 7172 7291 56.000 excellent
77- f 2 8670 8820 8322 9164 88.000 excellent
78- r 1 15398 15420 15224 15532 61.000 excellent
79- r 2 15290 15336 15009 15416 82.000 excellent
80- r 1 15090 15210 15032 15223 87.000 excellent
81- r 0 14905 14980 14836 15021 57.000 excellent
82- r 2 14711 14780 14640 15008 76.000 excellent
83- r 1 14540 14665 14447 14665 83.000 excellent
84- r 2 14330 14460 14310 14561 86.000 excellent
85- r 2 14150 14240 14130 14309 80.000 excellent
86- r 2 13986 14080 13920 14108 83.000 excellent
87- r 0 13840 13931 13801 14022 69.000 excellent
88- r 2 13620 13720 13488 13727 88.000 excellent
89- r 0 12660 12810 12589 12816 84.000 excellent
90- r 1 12170 12270 12137 12295 85.000 excellent
91- r 1 4880 5000 4679 5023 82.000 excellent
92- r 2 3757 3870 3681 4235 87.000 excellent
93- r 1 3525 3710 3482 3796 86.000 excellent
94- r 2 3270 3468 3252 3473 88.000 excellent
95- r 0 3080 3190 3025 3330 65.000 excellent
96- r 1 2689 2850 2441 2890 86.000 excellent
97- r 0 2510 2607 2407 2607 84.000 excellent
98- r 0 2298 2400 2242 2406 86.000 excellent
99- r 2 2067 2232 2067 2291 85.000 excellent
100- r 2 1660 1770 1632 1898 78.000 excellent
101- r 0 930 1030 859 1089 61.000 excellent
102- r 0 370 470 340 483 88.000 excellent
[grail1aexons -> Exon Translations]
103- KMDDTVYRYSRKNVPTVAR
104- TDVAARRKLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTR
105- NNVSALS
106- TRRIVISISAWKSCRQ
107- GGGGNFVLSSSLVGYTTVLGAVAPMVPHGYGFFYRIRED
108- LLGLYLIAKEEGRPVPELFLDPLYA
109- RFLFQDNAKRKAMQLAFEKHNNL
110- CCYETAMTRKFYHGRTETMRPCTVEAVKWCTAMTDPSCEVC
111- AQDLQVVCYAFTAFGKAAIKQKKLHPDTFIQLAMQLAYFKLHQR
112- GVDTVRVLPPPEELVFTVDEKVRSDIGRAK
113- LQHAPYDAMVLVTMCWYVDQRIQSTGGKWKV
114- IRWGDKSYNSVVYSDGTFGSNCDVSCDAPG
115- DPHNETILELIQSSLFTICLDETQPYSTPENYT
116- LAPQKAGETPLDMDQFRMLYCTCKVPGVTKDAIRSYFKTGARNGTFDTR
117- ASEKEFKATEDIVRNFQQGVGKELHQRLLQRAE
118- SKVSAADVTKSRRAASDGREKVTVNDSARDPSKRKTQEQD
119- GFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKC
120- TDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQTPLLDLMNDALILAKL
VISSRLGGSER
121- LRPMERRDIRQVTELLQKFLKRFQLAPSMTEEEVSHWFLPQDNIIDTYVV
EVAGISLKDSDPECLV
122- NPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVSSTNLT
123- SRVKRMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVV
LPK
124- LPQWHCGVRVSSNKKLVGFISAIPADIRIYDT
125- CLLQLKELYTLLNENYVEDDDNMFRFDYSPNFL
126- DCAIVPDEVVTSHGPIEADKENIRQEPYSLPQGFMWDTLDLGSAEVVRRL
WFQTQ
127- QDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPVPK
128- AKRKKKKQKRKKEKPSSGGAKSDSASDSQEFKV
129- MAEDSESAASQQSLELDDQDTCGIDGDNEEENE
[grail2exons -> Exons]
St Fr Start End ORFstart ORFend Score Quality
130- f 2 8372 9164 8322 9164 74.000 good
131- r 0 15538 15587 15511 15591 57.000 good
132- r 2 15296 15403 15009 15416 94.000 excellent
133- r 1 15091 15210 15032 15223 100.000 excellent
134- r 0 14891 15009 14836 15021 80.000 excellent
135- r 2 14724 14802 14640 15008 100.000 excellent
136- r 1 14533 14656 14447 14665 98.000 excellent
137- r 2 14328 14458 14310 14561 96.000 excellent
138- r 2 13992 14108 13920 14108 62.000 good
139- r 0 13807 13908 13801 14022 62.000 good
140- r 2 13596 13721 13488 13727 91.000 excellent
141- r 2 13337 13430 13233 13460 73.000 good
142- r 0 12654 12778 12589 12816 93.000 excellent
143- r 2 12345 12553 12303 12557 72.000 good
144- r 1 12159 12283 12137 12295 99.000 excellent
145- r 1 11408 11522 11408 11557 66.000 good
146- r 1 9912 9985 9887 9985 94.000 excellent
147- r 0 9391 9508 9346 9630 95.000 excellent
148- r 1 4727 5023 4679 5023 45.000 marginal
149- r 1 3586 3737 3482 3796 81.000 excellent
150- r 2 3252 3457 3252 3473 78.000 excellent
151- r 0 3060 3194 3025 3330 86.000 excellent
152- r 0 2924 2979 2608 3024 63.000 good
153- r 1 2695 2865 2441 2890 89.000 excellent
154- r 0 2487 2603 2407 2607 100.000 excellent
155- r 0 2311 2402 2242 2406 100.000 excellent
156- r 2 1662 1773 1632 1898 100.000 excellent
157- r 0 909 1026 859 1089 75.000 excellent
158- r 0 368 479 340 483 100.000 excellent
[grail2exons -> Shadow Exons]
St Fr Start End ORFstart ORFend Score Quality
159- f 0 1283 1380 1222 1380 49.000 marginal
160- f 1 1820 1868 1673 2077 63.000 good
161- f 1 3227 3373 3188 3373 70.000 good
162- f 2 12597 12761 12579 12761 42.000 marginal
163- f 0 13155 13288 13141 13515 82.000 excellent
[grail2exons -> Exon Translations]
164- RGLMAAAAKSAKKESKRYIPTKTCFTSPFTPKWSPLPQEDMHFILNTLKE
NFVSIGLVKKEPKVFRPWRKKKKQEAAQSQDSDLQVSQDAASQEPPKRGW
TDVAARRKLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTR
DVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAILPKV
PPLDVPWLQDTPASIKPDENRGQKRRLETESEEGTPVSSTTLQPLKVKKI
VPNSARKGKGKKKV
165- MPNVLNVDESEAQDLR
166- RIVISISAWKSCRQTDAVSLFNVFSSCLHEMLHLAT
167- GGGGNFVLSSSLVGYTTVLGAVAPMVPHGYGFFYRIRED
168- GFDRHLLGLYLIAKEEGRPVPELFLDPLYAKRYCVESAA
169- DNAKRKAMQLAFEKHNNLMAEAQEGR
170- PGCCYETAMTRKFYHGRTETMRPCTVEAVKWCTAMTDPSC
171- AQDLQVVCYAFTAFGKAAIKQKKLHPDTFIQLAMQLAYFKLHQ
172- HAPYDAMVLVTMCWYVDQRIQSTGGKWKVVTIPILGAL
173- LTRESLTGDPTIRWGDKSYNSVVYSDGTFGSNC
174- AREYLISIDPHNETILELIQSSLFTICLDETQPYSTPENYT
175- RQLSYVRQCCDGNPEGEGVSALTTEERTRWA
176- ERLAPQKAGETPLDMDQFRMLYCTCKVPGVTKDAIRSYFKT
177- MFNTVLSSQLEQWWLDAAYLEGRSPSQLTVNFAGPAPYLEHCWPPAEGTA
LERASICSWHMLQYWNLIR
178- RPFASEKEFKATEDIVRNFQQGVGKELHQRLLQRAETRRN
179- MANKLSESVPERTFQYQSSLPPLPVPSLETSLSKYLEA
180- MSQDEAMSDYINLGNEVISKYGI
181- AEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNT
182- LKVLRVRELVLSSSLDPNLINYKHVGAAGRFISHHIGRNWASVQMKWQQT
NSKVSAADVTKSRRAASDGREKVTVNDSARDPSKRKTQEQDWSRGAFT
183- SLKAAYSFYNVHTQTPLLDLMNDALILAKLVISSRLGGSERVGGSMSYLF
184- STKTPGLRPMERRDIRQVTELLQKFLKRFQLAPSMTEEEVSHWFLPQDNI
IDTYVVEVAGISLKDSDP
185- YWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVSSTNLTL
186- GSRLVCQAVDLVVEKPGW
187- VKRMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLP
KPVSTC
188- ALRPPGWLPQWHCGVRVSSNKKLVGFISAIPADIRIYD
189- LKELYTLLNENYVEDDDNMFRFDYSPNFLK
190- DIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPVPKL
191- SPGGDLGAKRKKKKQKRKKEKPSSGGAKSDSASDSQEF
192- VMAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQ
[PolyA Sites]
Str Start End Score
f 5174 5179 0.90
f 9425 9430 0.80
f 14368 14373 0.65
f 14773 14778 0.65
r 6465 6470 0.88
r 8405 8410 0.80
r 8880 8885 0.90
r 9069 9074 0.80
r 10178 10183 0.80
r 12032 12037 0.65
[CPG Islands]
Start End CpGscore GCscore
544 2254 0.90 56.27
12570 13558 0.77 59.52
15365 15726 0.91 53.41
[Repetitive]
Type Str Start End Score
THR f 9425 9455 19.00
THR f 13757 13771 15.00
MER21B f 15635 15666 18.00
MER21B r 15635 15666 0.00
[Simple Repeats]
Start End Score
10176 10219 106
11804 11845 91
3943 3975 74
11581 11599 48
14557 14569 37
14899 14914 34
13468 13475 24
5236 5245 22
9209 9217 21
[Frame Shift Errors]
Position Add/Del Base
1634 del A
2496 add C
3053 add C
6508 del T
8496 add C
8691 add C
11605 add C
11967 add C
12707 add C
13388 del A
14084 add C
15610 add C
15657 add C
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Last modified: Sun, 13 June 1999,
office@cbi.pku.edu.cn