Fgenes-m output
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Pattern based Human Multiple variants of Gene structure prediction
Name: Seq_name:all
First three lines of sequence:
TTANGATTCGTTTCCATGGAGCTGCCCATGACCATTTACACCATATACATACTGTCTCTGAGCAGAGATACGACA
CTCAGGCTGGTGATAAGGGAACACAGCTGTCAGGGGGCCAGAAGCAGCGTGTCGCCATAGCCCGAGCCATCATCC
GCAACCCCAAACTGTTGCTCCTGGACGAGGCCACGTCTGCGCTCGACACTGAGAGTGAGAAGGTGAGACTTTATT
fgenesm Thu Jun 3 19:26:00 CDT 1999
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 4 In +chain: 1 In -chain: 3
Number of predicted exons: 54 In +chain: 38 In -chain: 16
Predicted genes and exons in var: 1 Max var= 15 GENE WEIGHT: 127.1
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSf 2112 - 2152 2.86 2112 - 2150
1 + 2 CDSi 2629 - 2715 1.27 2628 - 2714
1 + 3 CDSi 2858 - 2891 1.46 2857 - 2889
1 + 4 CDSi 3474 - 3620 1.91 3475 - 3618
1 + 5 CDSi 4133 - 4257 2.99 4134 - 4256
1 + 6 CDSi 4377 - 4548 1.95 4377 - 4547
1 + 7 CDSi 5608 - 5718 0.58 5608 - 5718
1 + 8 CDSi 5805 - 5930 2.78 5805 - 5930
1 + 9 CDSi 6255 - 6458 2.09 6255 - 6458
1 + 10 CDSi 6543 - 6713 0.53 6543 - 6713
1 + 11 CDSi 7091 - 7252 3.20 7091 - 7252
1 + 12 CDSi 7344 - 7538 2.39 7344 - 7538
1 + 13 CDSi 7753 - 7899 1.25 7753 - 7899
1 + 14 CDSi 9203 - 9295 1.27 9203 - 9295
1 + 15 CDSi 9569 - 9652 1.77 9569 - 9652
1 + 16 CDSi 9726 - 9929 2.82 9726 - 9929
1 + 17 CDSi 10031 - 10054 1.84 10031 - 10054
1 + 18 CDSi 10281 - 10369 1.24 10282 - 10368
1 + 19 CDSi 11243 - 11399 1.54 11243 - 11398
1 + 20 CDSi 11487 - 11684 2.34 11487 - 11684
1 + 21 CDSi 12136 - 12591 3.62 12136 - 12591
1 + 22 CDSi 14431 - 14590 2.76 14433 - 14588
1 + 23 CDSi 14661 - 14709 0.76 14662 - 14709
1 + 24 CDSi 15232 - 15403 4.36 15232 - 15402
1 + 25 CDSi 15913 - 16029 1.80 15913 - 16029
1 + 26 CDSi 16171 - 16284 1.65 16171 - 16284
1 + 27 CDSi 17296 - 17406 0.90 17296 - 17406
1 + 28 CDSi 17475 - 17600 1.68 17475 - 17600
1 + 29 CDSi 17772 - 17975 4.02 17772 - 17975
1 + 30 CDSi 18060 - 18230 1.82 18060 - 18230
1 + 31 CDSi 18614 - 18775 2.16 18614 - 18775
1 + 32 CDSi 18867 - 19034 0.98 18867 - 19034
1 + 33 CDSi 19670 - 19774 3.96 19670 - 19774
1 + 34 CDSi 20075 - 20158 1.47 20075 - 20158
1 + 35 CDSi 20232 - 20435 1.78 20232 - 20435
1 + 36 CDSi 20522 - 20622 2.06 20523 - 20621
1 + 37 CDSi 20718 - 20858 1.55 20717 - 20857
1 + 38 CDSl 21566 - 21752 2.90 21567 - 21749
1 + PolA 24311 6.56
2 - PolA 23286 3.39
2 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
2 - 2 CDSi 25150 - 25228 4.26 25150 - 25227
2 - 3 CDSi 25296 - 25419 1.41 25297 - 25419
2 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
2 - 5 CDSi 25697 - 25768 0.82 25698 - 25769
2 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
3 - PolA 29769 7.51
3 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
3 - 2 CDSi 30444 - 30561 3.72 30446 - 30562
3 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
4 - PolA 35164 1.87
4 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
4 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
4 - 3 CDSi 36758 - 36892 1.88 36759 - 36890
4 - 4 CDSi 37550 - 37641 2.97 37552 - 37641
4 - 5 CDSi 38179 - 38320 3.45 38179 - 38319
4 - 6 CDSi 38926 - 39043 1.87 38928 - 39044
4 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 2112 - 21752 1800 a Ch+
MDMKSEIVEKQNLRWLGHLDGHHRSADGHCERAGESSDVYRVWSKQHLRSRYAEILHLLL
HLGVCCAGSGVPADVSVDPNGRAAGQTNSRVVFPRHHAAGHQLLLTSFTSKEQTAYAKAG
AVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMIYLSYA
LAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSYPSRPEIKI
LNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSLNIRYLREM
IGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGT
QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVIAHRL
STIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEPWVAEK
SQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPVSFFKVMRY
NVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTLNLRLKAFI
SMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIIISFVYG
WELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMIFFVYAACF
RFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLINRQPA
IDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSSGCGKS
TTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIAYGDNS
RSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQTVSEQ
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRFADRWDVVL
LISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQEDMQSD
VYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFSKIPQE
PAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSPNIQNFASA
RGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKILNNMSLSVK
SGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMIGVVSQEPV
LFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSGGQKQR
IAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIRNADII
AGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKSPVEKTVSQ
SSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIGCVSFVTMF
LQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFVYGWEL
TLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSREPKFE
CLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVEGVFLV
VSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 2 Max var= 15 GENE WEIGHT: 124.1
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 212 2.20 66 - 212
1 + 2 CDSl 285 - 491 1.41 285 - 488
1 + PolA 980 4.66
2 + 1 CDSf 3601 - 3924 3.61 3601 - 3924
2 + 2 CDSi 4133 - 4257 2.99 4134 - 4256
2 + 3 CDSi 4377 - 4548 1.95 4378 - 4548
2 + 4 CDSi 5608 - 5718 0.58 5608 - 5718
2 + 5 CDSi 5805 - 5930 2.78 5805 - 5930
2 + 6 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 7 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 8 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 9 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 10 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 11 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 12 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 13 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 14 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 15 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 16 CDSi 11243 - 11399 1.54 11244 - 11399
2 + 17 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 18 CDSi 12136 - 12591 3.62 12136 - 12591
2 + 19 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 20 CDSi 14661 - 14709 0.76 14663 - 14707
2 + 21 CDSi 15232 - 15403 4.36 15233 - 15403
2 + 22 CDSi 15913 - 16029 1.80 15913 - 16029
2 + 23 CDSi 16171 - 16284 1.65 16171 - 16284
2 + 24 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 25 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 26 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 27 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 28 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 29 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 30 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 31 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 32 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 33 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 34 CDSi 20718 - 20858 1.55 20719 - 20856
2 + 35 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
3 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
5 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
5 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 491 117 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKVVQEALDQARK
GRTCIVVAHRLSTIQNADCIAVFQGGVVVEKGTHQQLIAKKGVYHMLVTKQMGQHSG
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 3601 - 21752 1805 a Ch+
MQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGI
GDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSKLLTSFTSKEQTA
YAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMI
YLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSYPSR
PEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSLNIR
YLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLV
GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIV
IAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEP
WVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPVSFF
KVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTLNLR
LKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIII
SFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMIFFV
YAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLI
NRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSS
GCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIA
YGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQ
TVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRFADR
WDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQE
DMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFS
KIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSPNIQ
NFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKILNNM
SLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMIGVV
SQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSG
GQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIR
NADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKSPVE
KTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIGCVS
FVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFV
YGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSR
EPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVE
GVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPVNTQ
DPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 4 In +chain: 1 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 3 Max var= 15 GENE WEIGHT: 121.3
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 212 2.20 66 - 212
1 + 2 CDSi 2090 - 2152 1.46 2089 - 2151
1 + 3 CDSi 3474 - 3620 1.91 3473 - 3619
1 + 4 CDSi 4133 - 4257 2.99 4134 - 4256
1 + 5 CDSi 4377 - 4548 1.95 4378 - 4548
1 + 6 CDSi 5608 - 5718 0.58 5608 - 5718
1 + 7 CDSi 5805 - 5930 2.78 5805 - 5930
1 + 8 CDSi 6255 - 6458 2.09 6255 - 6458
1 + 9 CDSi 6543 - 6713 0.53 6543 - 6713
1 + 10 CDSi 7091 - 7252 3.20 7091 - 7252
1 + 11 CDSi 7344 - 7538 2.39 7344 - 7538
1 + 12 CDSi 7753 - 7899 1.25 7753 - 7899
1 + 13 CDSi 9203 - 9295 1.27 9203 - 9295
1 + 14 CDSi 9569 - 9652 1.77 9569 - 9652
1 + 15 CDSi 9726 - 9929 2.82 9726 - 9929
1 + 16 CDSi 10031 - 10054 1.84 10031 - 10054
1 + 17 CDSi 10281 - 10369 1.24 10281 - 10367
1 + 18 CDSi 11243 - 11399 1.54 11244 - 11399
1 + 19 CDSi 11487 - 11684 2.34 11487 - 11684
1 + 20 CDSi 12136 - 12591 3.62 12136 - 12591
1 + 21 CDSi 14431 - 14590 2.76 14431 - 14589
1 + 22 CDSi 14661 - 14709 0.76 14663 - 14707
1 + 23 CDSi 15232 - 15403 4.36 15233 - 15403
1 + 24 CDSi 15913 - 16029 1.80 15913 - 16029
1 + 25 CDSi 16171 - 16284 1.65 16171 - 16284
1 + 26 CDSi 17296 - 17406 0.90 17296 - 17406
1 + 27 CDSi 17475 - 17600 1.68 17475 - 17600
1 + 28 CDSi 17772 - 17975 4.02 17772 - 17975
1 + 29 CDSi 18060 - 18230 1.82 18060 - 18230
1 + 30 CDSi 18614 - 18775 2.16 18614 - 18775
1 + 31 CDSi 18867 - 19034 0.98 18867 - 19034
1 + 32 CDSi 19670 - 19774 3.96 19670 - 19774
1 + 33 CDSi 20075 - 20158 1.47 20075 - 20158
1 + 34 CDSi 20232 - 20435 1.78 20232 - 20435
1 + 35 CDSi 20522 - 20622 2.06 20522 - 20620
1 + 36 CDSi 20718 - 20858 1.55 20719 - 20856
1 + 37 CDSl 21566 - 21752 2.90 21567 - 21749
1 + PolA 24311 6.56
2 - PolA 23286 3.39
2 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
2 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
2 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
2 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
2 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
2 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
3 - PolA 29769 7.51
3 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
3 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
3 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
4 - PolA 35164 1.87
4 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
4 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
4 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
4 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
4 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
4 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
4 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 21752 1816 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKALLKGPKYGHE
ERNSGKTEFEILHLLLHLGVCCAGSGVPADVSVDPNGRAAGQTNSRVVFPRHHAAGHQLL
LTSFTSKEQTAYAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAA
NTATGFSFLMIYLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIV
FQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFI
DGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFI
MNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAAL
DKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQK
LEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIE
EDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFS
KSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQ
NFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIAT
EAIENAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKA
KISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQ
KGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPV
LFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSH
GAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALD
TESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNS
TTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVS
PALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGA
FSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYP
SRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLN
IRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFET
LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTT
IVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMS
ELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFI
SLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFA
NLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAI
ENVRTVVSLSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGA
WLIEAGRMDVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNL
SEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 1 In -chain: 4
Number of predicted exons: 51 In +chain: 33 In -chain: 18
Predicted genes and exons in var: 4 Max var= 15 GENE WEIGHT: 115.0
G Str Feature Start End Weight ORF-start ORF-end
1 - 1 CDSl 1 - 21 0.05 4 - 21
1 - 2 CDSf 1800 - 1922 3.95 1800 - 1922
2 + 1 CDSf 4628 - 4747 1.44 4628 - 4747
2 + 2 CDSi 5608 - 5718 0.58 5609 - 5716
2 + 3 CDSi 5805 - 5930 2.78 5806 - 5928
2 + 4 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 5 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 6 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 7 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 8 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 9 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 10 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 11 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 12 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 13 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 14 CDSi 11243 - 11399 1.54 11243 - 11398
2 + 15 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 16 CDSi 12136 - 12591 3.62 12137 - 12589
2 + 17 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 18 CDSi 14661 - 14709 0.76 14661 - 14708
2 + 19 CDSi 15232 - 15403 4.36 15232 - 15402
2 + 20 CDSi 15913 - 16029 1.80 15915 - 16028
2 + 21 CDSi 16171 - 16284 1.65 16172 - 16282
2 + 22 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 23 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 24 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 25 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 26 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 27 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 28 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 29 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 30 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 31 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 32 CDSi 20718 - 20858 1.55 20718 - 20858
2 + 33 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25152 - 25229
3 - 3 CDSi 25296 - 25419 1.41 25298 - 25420
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25699 - 25767
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30446 - 30562
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36277 - 36444
5 - 3 CDSi 36758 - 36892 1.88 36759 - 36893
5 - 4 CDSi 37550 - 37641 2.97 37552 - 37641
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38928 - 39041
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 1 - 1922 47 a Ch-
MRRFREASSPAVVVVGMSPRRLIILRRETLTYLSLTCQSCGLHGNES
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 4628 - 21752 1638 a Ch+
MKVFFVVLYGAYIIGQASPNVQSFASARGAAYKVYNIIDHKPNIDSFSEDGYKPEYIKGD
IVFQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSI
FIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYD
FIMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQA
ALDKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSF
QKLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDN
IEEDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFC
FSKSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVM
TQNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKI
ATEAIENAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFA
KAKISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLE
VQKGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQE
PVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLID
SHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSA
LDTESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGW
NSTTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILA
VSPALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLI
GAFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFN
YPSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRS
LNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKF
ETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGR
TTIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTA
MSELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSE
FISLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQN
FANLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATE
AIENVRTVVSLSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRF
GAWLIEAGRMDVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAID
NLSEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 1 In -chain: 4
Number of predicted exons: 51 In +chain: 33 In -chain: 18
Predicted genes and exons in var: 5 Max var= 15 GENE WEIGHT: 113.9
G Str Feature Start End Weight ORF-start ORF-end
1 - 1 CDSl 1 - 21 0.05 4 - 21
1 - 2 CDSf 1800 - 1874 2.89 1800 - 1874
2 + 1 CDSf 4628 - 4747 1.44 4628 - 4747
2 + 2 CDSi 5608 - 5718 0.58 5609 - 5716
2 + 3 CDSi 5805 - 5930 2.78 5806 - 5928
2 + 4 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 5 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 6 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 7 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 8 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 9 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 10 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 11 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 12 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 13 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 14 CDSi 11243 - 11399 1.54 11243 - 11398
2 + 15 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 16 CDSi 12136 - 12591 3.62 12137 - 12589
2 + 17 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 18 CDSi 14661 - 14709 0.76 14661 - 14708
2 + 19 CDSi 15232 - 15403 4.36 15232 - 15402
2 + 20 CDSi 15913 - 16029 1.80 15915 - 16028
2 + 21 CDSi 16171 - 16284 1.65 16172 - 16282
2 + 22 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 23 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 24 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 25 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 26 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 27 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 28 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 29 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 30 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 31 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 32 CDSi 20718 - 20858 1.55 20718 - 20858
2 + 33 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25152 - 25229
3 - 3 CDSi 25296 - 25419 1.41 25298 - 25420
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25699 - 25767
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30446 - 30562
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36277 - 36444
5 - 3 CDSi 36758 - 36892 1.88 36759 - 36893
5 - 4 CDSi 37550 - 37641 2.97 37552 - 37641
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38928 - 39041
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 1 - 1874 31 a Ch-
MSPRRLIILRRETLTYLSLTCQSCGLHGNES
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 4628 - 21752 1638 a Ch+
MKVFFVVLYGAYIIGQASPNVQSFASARGAAYKVYNIIDHKPNIDSFSEDGYKPEYIKGD
IVFQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSI
FIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYD
FIMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQA
ALDKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSF
QKLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDN
IEEDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFC
FSKSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVM
TQNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKI
ATEAIENAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFA
KAKISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLE
VQKGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQE
PVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLID
SHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSA
LDTESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGW
NSTTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILA
VSPALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLI
GAFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFN
YPSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRS
LNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKF
ETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGR
TTIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTA
MSELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSE
FISLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQN
FANLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATE
AIENVRTVVSLSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRF
GAWLIEAGRMDVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAID
NLSEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 6 Max var= 15 GENE WEIGHT: 124.0
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 204 0.75 66 - 203
1 + 2 CDSl 285 - 556 1.35 287 - 553
1 + PolA 980 4.66
2 + 1 CDSf 3601 - 3924 3.61 3601 - 3924
2 + 2 CDSi 4133 - 4257 2.99 4134 - 4256
2 + 3 CDSi 4377 - 4548 1.95 4378 - 4548
2 + 4 CDSi 5608 - 5718 0.58 5608 - 5718
2 + 5 CDSi 5805 - 5930 2.78 5805 - 5930
2 + 6 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 7 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 8 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 9 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 10 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 11 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 12 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 13 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 14 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 15 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 16 CDSi 11243 - 11399 1.54 11244 - 11399
2 + 17 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 18 CDSi 12136 - 12591 3.62 12136 - 12591
2 + 19 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 20 CDSi 14661 - 14709 0.76 14663 - 14707
2 + 21 CDSi 15232 - 15403 4.36 15233 - 15403
2 + 22 CDSi 15913 - 16029 1.80 15913 - 16029
2 + 23 CDSi 16171 - 16284 1.65 16171 - 16284
2 + 24 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 25 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 26 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 27 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 28 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 29 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 30 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 31 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 32 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 33 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 34 CDSi 20718 - 20858 1.55 20719 - 20856
2 + 35 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
3 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
5 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
5 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 556 136 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESGAGGVGPGQEGQD
VHRRSPPSVHHPERRLHRCVPGRSGGGKGDAPAADRQEGSVPHAGHQTDGSTQWIKDGDN
YANIIFTSQSSLMGVV
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 3601 - 21752 1805 a Ch+
MQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGI
GDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSKLLTSFTSKEQTA
YAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMI
YLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSYPSR
PEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSLNIR
YLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLV
GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIV
IAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEP
WVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPVSFF
KVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTLNLR
LKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIII
SFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMIFFV
YAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLI
NRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSS
GCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIA
YGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQ
TVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRFADR
WDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQE
DMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFS
KIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSPNIQ
NFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKILNNM
SLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMIGVV
SQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSG
GQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIR
NADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKSPVE
KTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIGCVS
FVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFV
YGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSR
EPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVE
GVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPVNTQ
DPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 7 Max var= 15 GENE WEIGHT: 123.7
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 204 0.75 66 - 203
1 + 2 CDSl 640 - 794 1.22 642 - 791
1 + PolA 980 4.66
2 + 1 CDSf 3601 - 3924 3.61 3601 - 3924
2 + 2 CDSi 4133 - 4257 2.99 4134 - 4256
2 + 3 CDSi 4377 - 4548 1.95 4378 - 4548
2 + 4 CDSi 5608 - 5718 0.58 5608 - 5718
2 + 5 CDSi 5805 - 5930 2.78 5805 - 5930
2 + 6 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 7 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 8 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 9 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 10 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 11 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 12 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 13 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 14 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 15 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 16 CDSi 11243 - 11399 1.54 11244 - 11399
2 + 17 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 18 CDSi 12136 - 12591 3.62 12136 - 12591
2 + 19 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 20 CDSi 14661 - 14709 0.76 14663 - 14707
2 + 21 CDSi 15232 - 15403 4.36 15233 - 15403
2 + 22 CDSi 15913 - 16029 1.80 15913 - 16029
2 + 23 CDSi 16171 - 16284 1.65 16171 - 16284
2 + 24 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 25 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 26 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 27 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 28 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 29 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 30 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 31 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 32 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 33 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 34 CDSi 20718 - 20858 1.55 20719 - 20856
2 + 35 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
3 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
5 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
5 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 794 97 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTEIHYRDQSSSLAQTT
PQSAQVPFIHHFWIILSIILIRANFALFSLSSFSEEL
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 3601 - 21752 1805 a Ch+
MQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGI
GDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSKLLTSFTSKEQTA
YAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMI
YLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSYPSR
PEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSLNIR
YLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLV
GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIV
IAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEP
WVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPVSFF
KVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTLNLR
LKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIII
SFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMIFFV
YAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLI
NRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSS
GCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIA
YGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQ
TVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRFADR
WDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQE
DMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFS
KIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSPNIQ
NFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKILNNM
SLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMIGVV
SQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSG
GQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIR
NADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKSPVE
KTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIGCVS
FVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFV
YGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSR
EPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVE
GVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPVNTQ
DPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 8 Max var= 15 GENE WEIGHT: 123.1
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 212 2.20 66 - 212
1 + 2 CDSl 363 - 491 0.89 363 - 488
1 + PolA 980 4.66
2 + 1 CDSf 3601 - 3924 3.61 3601 - 3924
2 + 2 CDSi 4133 - 4257 2.99 4134 - 4256
2 + 3 CDSi 4377 - 4548 1.95 4378 - 4548
2 + 4 CDSi 5608 - 5718 0.58 5608 - 5718
2 + 5 CDSi 5805 - 5930 2.78 5805 - 5930
2 + 6 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 7 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 8 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 9 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 10 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 11 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 12 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 13 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 14 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 15 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 16 CDSi 11243 - 11399 1.54 11244 - 11399
2 + 17 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 18 CDSi 12136 - 12591 3.62 12136 - 12591
2 + 19 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 20 CDSi 14661 - 14709 0.76 14663 - 14707
2 + 21 CDSi 15232 - 15403 4.36 15233 - 15403
2 + 22 CDSi 15913 - 16029 1.80 15913 - 16029
2 + 23 CDSi 16171 - 16284 1.65 16171 - 16284
2 + 24 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 25 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 26 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 27 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 28 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 29 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 30 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 31 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 32 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 33 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 34 CDSi 20718 - 20858 1.55 20719 - 20856
2 + 35 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
3 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
5 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
5 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 491 91 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKNADCIAVFQGG
VVVEKGTHQQLIAKKGVYHMLVTKQMGQHSG
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 3601 - 21752 1805 a Ch+
MQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGI
GDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSKLLTSFTSKEQTA
YAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMI
YLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSYPSR
PEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSLNIR
YLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLV
GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIV
IAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEP
WVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPVSFF
KVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTLNLR
LKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIII
SFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMIFFV
YAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLI
NRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSS
GCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIA
YGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQ
TVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRFADR
WDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQE
DMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFS
KIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSPNIQ
NFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKILNNM
SLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMIGVV
SQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSG
GQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIR
NADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKSPVE
KTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIGCVS
FVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFV
YGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSR
EPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVE
GVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPVNTQ
DPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 4 In +chain: 1 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 9 Max var= 15 GENE WEIGHT: 120.9
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 212 2.20 66 - 212
1 + 2 CDSi 2087 - 2152 1.05 2086 - 2151
1 + 3 CDSi 3474 - 3620 1.91 3473 - 3619
1 + 4 CDSi 4133 - 4257 2.99 4134 - 4256
1 + 5 CDSi 4377 - 4548 1.95 4378 - 4548
1 + 6 CDSi 5608 - 5718 0.58 5608 - 5718
1 + 7 CDSi 5805 - 5930 2.78 5805 - 5930
1 + 8 CDSi 6255 - 6458 2.09 6255 - 6458
1 + 9 CDSi 6543 - 6713 0.53 6543 - 6713
1 + 10 CDSi 7091 - 7252 3.20 7091 - 7252
1 + 11 CDSi 7344 - 7538 2.39 7344 - 7538
1 + 12 CDSi 7753 - 7899 1.25 7753 - 7899
1 + 13 CDSi 9203 - 9295 1.27 9203 - 9295
1 + 14 CDSi 9569 - 9652 1.77 9569 - 9652
1 + 15 CDSi 9726 - 9929 2.82 9726 - 9929
1 + 16 CDSi 10031 - 10054 1.84 10031 - 10054
1 + 17 CDSi 10281 - 10369 1.24 10281 - 10367
1 + 18 CDSi 11243 - 11399 1.54 11244 - 11399
1 + 19 CDSi 11487 - 11684 2.34 11487 - 11684
1 + 20 CDSi 12136 - 12591 3.62 12136 - 12591
1 + 21 CDSi 14431 - 14590 2.76 14431 - 14589
1 + 22 CDSi 14661 - 14709 0.76 14663 - 14707
1 + 23 CDSi 15232 - 15403 4.36 15233 - 15403
1 + 24 CDSi 15913 - 16029 1.80 15913 - 16029
1 + 25 CDSi 16171 - 16284 1.65 16171 - 16284
1 + 26 CDSi 17296 - 17406 0.90 17296 - 17406
1 + 27 CDSi 17475 - 17600 1.68 17475 - 17600
1 + 28 CDSi 17772 - 17975 4.02 17772 - 17975
1 + 29 CDSi 18060 - 18230 1.82 18060 - 18230
1 + 30 CDSi 18614 - 18775 2.16 18614 - 18775
1 + 31 CDSi 18867 - 19034 0.98 18867 - 19034
1 + 32 CDSi 19670 - 19774 3.96 19670 - 19774
1 + 33 CDSi 20075 - 20158 1.47 20075 - 20158
1 + 34 CDSi 20232 - 20435 1.78 20232 - 20435
1 + 35 CDSi 20522 - 20622 2.06 20522 - 20620
1 + 36 CDSi 20718 - 20858 1.55 20719 - 20856
1 + 37 CDSl 21566 - 21752 2.90 21567 - 21749
1 + PolA 24311 6.56
2 - PolA 23286 3.39
2 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
2 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
2 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
2 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
2 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
2 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
3 - PolA 29769 7.51
3 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
3 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
3 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
4 - PolA 35164 1.87
4 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
4 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
4 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
4 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
4 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
4 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
4 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 21752 1817 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKQALLKGPKYGH
EERNSGKTEFEILHLLLHLGVCCAGSGVPADVSVDPNGRAAGQTNSRVVFPRHHAAGHQL
LLTSFTSKEQTAYAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVA
ANTATGFSFLMIYLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDI
VFQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIF
IDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDF
IMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
LDKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQ
KLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNI
EEDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCF
SKSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMT
QNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIA
TEAIENAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAK
AKISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEV
QKGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEP
VLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDS
HGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSAL
DTESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWN
STTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAV
SPALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIG
AFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNY
PSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSL
NIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFE
TLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRT
TIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAM
SELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEF
ISLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNF
ANLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEA
IENVRTVVSLSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFG
AWLIEAGRMDVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDN
LSEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 51 In +chain: 35 In -chain: 16
Predicted genes and exons in var: 10 Max var= 15 GENE WEIGHT: 113.8
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 212 2.20 66 - 212
1 + 2 CDSl 1240 - 1491 1.04 1240 - 1488
1 + PolA 1754 1.18
2 + 1 CDSf 4628 - 4747 1.44 4628 - 4747
2 + 2 CDSi 5608 - 5718 0.58 5609 - 5716
2 + 3 CDSi 5805 - 5930 2.78 5806 - 5928
2 + 4 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 5 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 6 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 7 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 8 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 9 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 10 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 11 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 12 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 13 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 14 CDSi 11243 - 11399 1.54 11243 - 11398
2 + 15 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 16 CDSi 12136 - 12591 3.62 12137 - 12589
2 + 17 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 18 CDSi 14661 - 14709 0.76 14661 - 14708
2 + 19 CDSi 15232 - 15403 4.36 15232 - 15402
2 + 20 CDSi 15913 - 16029 1.80 15915 - 16028
2 + 21 CDSi 16171 - 16284 1.65 16172 - 16282
2 + 22 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 23 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 24 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 25 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 26 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 27 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 28 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 29 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 30 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 31 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 32 CDSi 20718 - 20858 1.55 20718 - 20858
2 + 33 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25152 - 25229
3 - 3 CDSi 25296 - 25419 1.41 25298 - 25420
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25699 - 25767
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30446 - 30562
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36277 - 36444
5 - 3 CDSi 36758 - 36892 1.88 36759 - 36893
5 - 4 CDSi 37550 - 37641 2.97 37552 - 37641
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38928 - 39041
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 1491 132 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKIFDKIKEKNTR
NVFREVIIMVLGSSAVTSEEGKQSIKVNAIEISGASEVTLTLKKESHNPQCQRQLSSFMQ
PRQQNNLKQQIK
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 4628 - 21752 1638 a Ch+
MKVFFVVLYGAYIIGQASPNVQSFASARGAAYKVYNIIDHKPNIDSFSEDGYKPEYIKGD
IVFQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSI
FIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYD
FIMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQA
ALDKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSF
QKLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDN
IEEDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFC
FSKSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVM
TQNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKI
ATEAIENAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFA
KAKISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLE
VQKGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQE
PVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLID
SHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSA
LDTESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGW
NSTTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILA
VSPALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLI
GAFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFN
YPSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRS
LNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKF
ETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGR
TTIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTA
MSELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSE
FISLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQN
FANLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATE
AIENVRTVVSLSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRF
GAWLIEAGRMDVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAID
NLSEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 11 Max var= 15 GENE WEIGHT: 122.7
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 204 0.75 66 - 203
1 + 2 CDSl 363 - 556 0.74 365 - 553
1 + PolA 980 4.66
2 + 1 CDSf 3601 - 3924 3.61 3601 - 3924
2 + 2 CDSi 4133 - 4257 2.99 4134 - 4256
2 + 3 CDSi 4377 - 4548 1.95 4378 - 4548
2 + 4 CDSi 5608 - 5718 0.58 5608 - 5718
2 + 5 CDSi 5805 - 5930 2.78 5805 - 5930
2 + 6 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 7 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 8 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 9 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 10 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 11 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 12 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 13 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 14 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 15 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 16 CDSi 11243 - 11399 1.54 11244 - 11399
2 + 17 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 18 CDSi 12136 - 12591 3.62 12136 - 12591
2 + 19 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 20 CDSi 14661 - 14709 0.76 14663 - 14707
2 + 21 CDSi 15232 - 15403 4.36 15233 - 15403
2 + 22 CDSi 15913 - 16029 1.80 15913 - 16029
2 + 23 CDSi 16171 - 16284 1.65 16171 - 16284
2 + 24 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 25 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 26 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 27 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 28 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 29 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 30 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 31 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 32 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 33 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 34 CDSi 20718 - 20858 1.55 20719 - 20856
2 + 35 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
3 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
5 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
5 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 556 110 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTEKRRLHRCVPGRSGG
GKGDAPAADRQEGSVPHAGHQTDGSTQWIKDGDNYANIIFTSQSSLMGVV
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 3601 - 21752 1805 a Ch+
MQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGI
GDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSKLLTSFTSKEQTA
YAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMI
YLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSYPSR
PEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSLNIR
YLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLV
GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIV
IAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEP
WVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPVSFF
KVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTLNLR
LKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIII
SFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMIFFV
YAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLI
NRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSS
GCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIA
YGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQ
TVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRFADR
WDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQE
DMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFS
KIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSPNIQ
NFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKILNNM
SLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMIGVV
SQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSG
GQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIR
NADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKSPVE
KTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIGCVS
FVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFV
YGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSR
EPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVE
GVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPVNTQ
DPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 12 Max var= 15 GENE WEIGHT: 122.2
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 212 2.20 66 - 212
1 + 2 CDSl 640 - 669 0.46 640 - 666
1 + PolA 980 4.66
2 + 1 CDSf 3601 - 3924 3.61 3601 - 3924
2 + 2 CDSi 4133 - 4257 2.99 4134 - 4256
2 + 3 CDSi 4377 - 4548 1.95 4378 - 4548
2 + 4 CDSi 5608 - 5718 0.58 5608 - 5718
2 + 5 CDSi 5805 - 5930 2.78 5805 - 5930
2 + 6 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 7 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 8 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 9 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 10 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 11 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 12 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 13 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 14 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 15 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 16 CDSi 11243 - 11399 1.54 11244 - 11399
2 + 17 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 18 CDSi 12136 - 12591 3.62 12136 - 12591
2 + 19 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 20 CDSi 14661 - 14709 0.76 14663 - 14707
2 + 21 CDSi 15232 - 15403 4.36 15233 - 15403
2 + 22 CDSi 15913 - 16029 1.80 15913 - 16029
2 + 23 CDSi 16171 - 16284 1.65 16171 - 16284
2 + 24 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 25 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 26 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 27 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 28 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 29 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 30 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 31 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 32 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 33 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 34 CDSi 20718 - 20858 1.55 20719 - 20856
2 + 35 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
3 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
5 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
5 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 669 58 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFIIVINLPL
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 3601 - 21752 1805 a Ch+
MQQDISWYDVTETGELNTRLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGI
GDKAGLLIQAASTFITSFVIGFVHGWKLTLVILAISPVLGLSAALYSKLLTSFTSKEQTA
YAKAGAVAAEVLSSIRTVFAFSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMI
YLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSYPSR
PEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSLNIR
YLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLV
GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIV
IAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSDYEP
WVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPVSFF
KVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTLNLR
LKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIII
SFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMIFFV
YAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLI
NRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSS
GCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIA
YGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQ
TVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRFADR
WDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQE
DMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFS
KIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSPNIQ
NFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKILNNM
SLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMIGVV
SQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSG
GQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLSTIR
NADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKSPVE
KTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIGCVS
FVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFV
YGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSR
EPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVE
GVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPVNTQ
DPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 51 In +chain: 35 In -chain: 16
Predicted genes and exons in var: 13 Max var= 15 GENE WEIGHT: 112.7
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 204 0.75 66 - 203
1 + 2 CDSl 1316 - 1491 0.48 1318 - 1488
1 + PolA 1754 1.18
2 + 1 CDSf 4628 - 4747 1.44 4628 - 4747
2 + 2 CDSi 5608 - 5718 0.58 5609 - 5716
2 + 3 CDSi 5805 - 5930 2.78 5806 - 5928
2 + 4 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 5 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 6 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 7 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 8 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 9 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 10 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 11 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 12 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 13 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 14 CDSi 11243 - 11399 1.54 11243 - 11398
2 + 15 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 16 CDSi 12136 - 12591 3.62 12137 - 12589
2 + 17 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 18 CDSi 14661 - 14709 0.76 14661 - 14708
2 + 19 CDSi 15232 - 15403 4.36 15232 - 15402
2 + 20 CDSi 15913 - 16029 1.80 15915 - 16028
2 + 21 CDSi 16171 - 16284 1.65 16172 - 16282
2 + 22 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 23 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 24 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 25 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 26 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 27 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 28 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 29 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 30 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 31 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 32 CDSi 20718 - 20858 1.55 20718 - 20858
2 + 33 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25152 - 25229
3 - 3 CDSi 25296 - 25419 1.41 25298 - 25420
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25699 - 25767
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30446 - 30562
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36277 - 36444
5 - 3 CDSi 36758 - 36892 1.88 36759 - 36893
5 - 4 CDSi 37550 - 37641 2.97 37552 - 37641
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38928 - 39041
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 1491 104 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTETVTSEEGKQSIKVN
AIEISGASEVTLTLKKESHNPQCQRQLSSFMQPRQQNNLKQQIK
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 4628 - 21752 1638 a Ch+
MKVFFVVLYGAYIIGQASPNVQSFASARGAAYKVYNIIDHKPNIDSFSEDGYKPEYIKGD
IVFQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSI
FIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYD
FIMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQA
ALDKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSF
QKLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDN
IEEDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFC
FSKSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVM
TQNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKI
ATEAIENAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFA
KAKISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLE
VQKGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQE
PVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLID
SHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSA
LDTESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGW
NSTTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILA
VSPALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLI
GAFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFN
YPSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRS
LNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKF
ETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGR
TTIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTA
MSELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSE
FISLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQN
FANLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATE
AIENVRTVVSLSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRF
GAWLIEAGRMDVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAID
NLSEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 2 In -chain: 3
Number of predicted exons: 53 In +chain: 37 In -chain: 16
Predicted genes and exons in var: 14 Max var= 15 GENE WEIGHT: 115.6
G Str Feature Start End Weight ORF-start ORF-end
1 + 1 CDSi 66 - 212 2.20 66 - 212
1 + 2 CDSl 1077 - 1121 0.44 1077 - 1118
1 + PolA 1251 4.09
2 + 1 CDSf 3851 - 3924 1.34 3851 - 3922
2 + 2 CDSi 4234 - 4257 0.86 4235 - 4255
2 + 3 CDSi 4377 - 4548 1.95 4378 - 4548
2 + 4 CDSi 5608 - 5718 0.58 5608 - 5718
2 + 5 CDSi 5805 - 5930 2.78 5805 - 5930
2 + 6 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 7 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 8 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 9 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 10 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 11 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 12 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 13 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 14 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 15 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 16 CDSi 11243 - 11399 1.54 11244 - 11399
2 + 17 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 18 CDSi 12136 - 12591 3.62 12136 - 12591
2 + 19 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 20 CDSi 14661 - 14709 0.76 14663 - 14707
2 + 21 CDSi 15232 - 15403 4.36 15233 - 15403
2 + 22 CDSi 15913 - 16029 1.80 15913 - 16029
2 + 23 CDSi 16171 - 16284 1.65 16171 - 16284
2 + 24 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 25 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 26 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 27 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 28 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 29 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 30 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 31 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 32 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 33 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 34 CDSi 20718 - 20858 1.55 20719 - 20856
2 + 35 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25151 - 25228
3 - 3 CDSi 25296 - 25419 1.41 25296 - 25418
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25697 - 25768
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30445 - 30561
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36276 - 36443
5 - 3 CDSi 36758 - 36892 1.88 36758 - 36892
5 - 4 CDSi 37550 - 37641 2.97 37550 - 37639
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38926 - 39042
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 66 - 1121 63 a Ch+
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKTCSAEKALEPS
FYI
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 3851 - 21752 1688 a Ch+
MDGSSPWSSWPSALCWVSQLPFTVSGQRKAIKRYHKNLEDARDMGIKKGVAANTATGFSF
LMIYLSYALAFWYGTTLVLNKEYTIGNLLTKPNIDSFSEDGYKPEYIKGDIVFQNIHFSY
PSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSIFIDGHDIRSL
NIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFE
TLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRT
TIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSFQKLEDLEDSD
YEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDNIEEDENVPPV
SFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFCFSKSGEILTL
NLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTS
IIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKIATEAIENAMI
FFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFAKAKISASHLT
MLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALV
GSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAE
NIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLH
HIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKFRF
ADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNST
LQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAA
FFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLIGAFSVGQTSP
NIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVKIL
NNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRSLNIRYLREMI
GVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQ
LSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGRTTIVVAHRLS
TIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTAMSELSAGEKS
PVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSEFISLMFVVIG
CVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIII
AFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVS
LSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRM
DVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPV
NTQDPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
FGENES-M 1.5.0 Prediction of several variants of multiple genes
Time: 19:24:03 Date: Thu Jun 3 1999
Seq name: >Seq_name:all
Length of sequence: 39951 GC content: 0.46 Zone: 2
Number of predicted genes: 5 In +chain: 1 In -chain: 4
Number of predicted exons: 51 In +chain: 33 In -chain: 18
Predicted genes and exons in var: 15 Max var= 15 GENE WEIGHT: 111.5
G Str Feature Start End Weight ORF-start ORF-end
1 - 1 CDSl 77 - 186 0.11 80 - 184
1 - 2 CDSf 1814 - 1922 0.45 1815 - 1922
2 + 1 CDSf 4628 - 4747 1.44 4628 - 4747
2 + 2 CDSi 5608 - 5718 0.58 5609 - 5716
2 + 3 CDSi 5805 - 5930 2.78 5806 - 5928
2 + 4 CDSi 6255 - 6458 2.09 6255 - 6458
2 + 5 CDSi 6543 - 6713 0.53 6543 - 6713
2 + 6 CDSi 7091 - 7252 3.20 7091 - 7252
2 + 7 CDSi 7344 - 7538 2.39 7344 - 7538
2 + 8 CDSi 7753 - 7899 1.25 7753 - 7899
2 + 9 CDSi 9203 - 9295 1.27 9203 - 9295
2 + 10 CDSi 9569 - 9652 1.77 9569 - 9652
2 + 11 CDSi 9726 - 9929 2.82 9726 - 9929
2 + 12 CDSi 10031 - 10054 1.84 10031 - 10054
2 + 13 CDSi 10281 - 10369 1.24 10281 - 10367
2 + 14 CDSi 11243 - 11399 1.54 11243 - 11398
2 + 15 CDSi 11487 - 11684 2.34 11487 - 11684
2 + 16 CDSi 12136 - 12591 3.62 12137 - 12589
2 + 17 CDSi 14431 - 14590 2.76 14431 - 14589
2 + 18 CDSi 14661 - 14709 0.76 14661 - 14708
2 + 19 CDSi 15232 - 15403 4.36 15232 - 15402
2 + 20 CDSi 15913 - 16029 1.80 15915 - 16028
2 + 21 CDSi 16171 - 16284 1.65 16172 - 16282
2 + 22 CDSi 17296 - 17406 0.90 17296 - 17406
2 + 23 CDSi 17475 - 17600 1.68 17475 - 17600
2 + 24 CDSi 17772 - 17975 4.02 17772 - 17975
2 + 25 CDSi 18060 - 18230 1.82 18060 - 18230
2 + 26 CDSi 18614 - 18775 2.16 18614 - 18775
2 + 27 CDSi 18867 - 19034 0.98 18867 - 19034
2 + 28 CDSi 19670 - 19774 3.96 19670 - 19774
2 + 29 CDSi 20075 - 20158 1.47 20075 - 20158
2 + 30 CDSi 20232 - 20435 1.78 20232 - 20435
2 + 31 CDSi 20522 - 20622 2.06 20522 - 20620
2 + 32 CDSi 20718 - 20858 1.55 20718 - 20858
2 + 33 CDSl 21566 - 21752 2.90 21567 - 21749
2 + PolA 24311 6.56
3 - PolA 23286 3.39
3 - 1 CDSl 24536 - 24861 2.18 24539 - 24859
3 - 2 CDSi 25150 - 25228 4.26 25152 - 25229
3 - 3 CDSi 25296 - 25419 1.41 25298 - 25420
3 - 4 CDSi 25494 - 25618 1.66 25496 - 25618
3 - 5 CDSi 25697 - 25768 0.82 25699 - 25767
3 - 6 CDSf 25877 - 25942 4.08 25877 - 25942
4 - PolA 29769 7.51
4 - 1 CDSl 29967 - 30040 2.25 29970 - 30038
4 - 2 CDSi 30444 - 30561 3.72 30446 - 30562
4 - 3 CDSf 31336 - 31347 3.29 31336 - 31347
5 - PolA 35164 1.87
5 - 1 CDSl 35717 - 36199 2.14 35720 - 36199
5 - 2 CDSi 36276 - 36443 1.04 36277 - 36444
5 - 3 CDSi 36758 - 36892 1.88 36759 - 36893
5 - 4 CDSi 37550 - 37641 2.97 37552 - 37641
5 - 5 CDSi 38179 - 38320 3.45 38180 - 38320
5 - 6 CDSi 38926 - 39043 1.87 38928 - 39041
5 - 7 CDSf 39473 - 39582 5.16 39475 - 39582
Predicted proteins:
>FGENES-M 1.5 >Seq_name:all 1 Multiexon gene 77 - 1922 72 a Ch-
MRRFREASSPAVVVVGMSPRRLIILRRETLTYLSLTYVASSRSNSLGLRMMARAMATRCF
WPPDSCVPLSPA
>FGENES-M 1.5 >Seq_name:all 2 Multiexon gene 4628 - 21752 1638 a Ch+
MKVFFVVLYGAYIIGQASPNVQSFASARGAAYKVYNIIDHKPNIDSFSEDGYKPEYIKGD
IVFQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGSI
FIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYD
FIMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQA
ALDKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQSF
QKLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLAVSEGTKEEKEKFECDQDN
IEEDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPVFSIIFTEIIMFWGFQGFC
FSKSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVM
TQNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKI
ATEAIENAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNFA
KAKISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNLE
VQKGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQE
PVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLID
SHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSA
LDTESEKFRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGW
NSTTTILNSTLQEDMQSDVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILA
VSPALAISAAFFSKIPQEPAGRKGRGSEEGHLLQHRHGLHLPDDLPVLCSGLLVFFVVLI
GAFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPDFIKGDIEFKNIHFN
YPSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGAVFIDGHDIRS
LNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDKF
ETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALDKVRLGR
TTIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQTFHNVEEENTA
MSELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVFADPDRDSVRRKSE
FISLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGAAGVRLATIMQN
FANLGTSIIIAFVYGWELTLLILAVVPLIAAAGAAEIKLLAGHAAKDKKELEKAGKIATE
AIENVRTVVSLSREPKFECLYEENLRVPYKNSQKKAHVYGLTYSFSQAMIYFAYAACFRF
GAWLIEAGRMDVEGVFLVVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAID
NLSEEGTSPVNTQDPAQR
>FGENES-M 1.5 >Seq_name:all 3 Multiexon gene 24536 - 25942 263 a Ch-
MVLVTMCWYVDQRIQSTGGKWKELVFTVDEKVRSDIGRAKKQYFESDLQVVCYAFTAFGK
AAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTRKFYHGRTETMRPCTVEAVKWC
TAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRVAVAETLCCRPAWWATPQFWARWRR
WFPTATASSTVSERTGGPTDGSLCCRHGLTHHIQSYPLCTLTRRIVISISAWKSCRQTDA
VSLFNVFSSCLHEMLHLATTSQL
>FGENES-M 1.5 >Seq_name:all 4 Multiexon gene 29967 - 31347 67 a Ch-
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTGMSQDEAMSDYINLGNE
VISKYGI
>FGENES-M 1.5 >Seq_name:all 5 Multiexon gene 35717 - 39582 415 a Ch-
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLTEGVVHVTERELRGGRRQHVQIRLFAKLSQMVLAPFSEPQEACGSEVLPPEQKHDPA
TDHEALQITRRKQHQPDAQGAGGALTDFASFYTLPSTVMHHPLHRSLKAAYSFYNVHTQT
PLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPD
KVRINNACISISRRRCFCSLQPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQ
VAQTLKMKRIQPTRRPSGVPPPPPLSDNTTPPQFAGRGGDNSSIINILNVKSCYA
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Last modified: Fri, 4 June 1999,
office@cbi.pku.edu.cn