FGenep output

Multiple genes structure prediction in plant genomic DNA

Name: Seq_name:all
First three lines of sequence:
TTANGATTCGTTTCCATGGAGCTGCCCATGACCATTTACACCATATACATACTGTCTCTGAGCAGAGATACGACA
CTCAGGCTGGTGATAAGGGAACACAGCTGTCAGGGGGCCAGAAGCAGCGTGTCGCCATAGCCCGAGCCATCATCC
GCAACCCCAAACTGTTGCTCCTGGACGAGGCCACGTCTGCGCTCGACACTGAGAGTGAGAAGGTGAGACTTTATT


fgsa  Thu Jun  3 19:48:47 CDT 1999
>Fgenep: Prediction of plant genes
 Time: 19:46:24 Date: Thu Jun  3 1999
 Seq name: >Seq_name:all                                               
 Length of sequence:   39951 GC content: 0.46 Zone: 2
 Number of predicted genes:   2 In +chain:   1 In -chain:   1
 Number of predicted exons:  33 In +chain:  26 In -chain:   7
 Predicted genes and exons in var:   1 Max var=    1 GENE WEIGHT:  151.1
  1 +   1 CDSi      63 -     212 w=   3.53 ORF      63 -     212
  1 +   2 CDSi     675 -     695 w=   2.12 ORF     675 -     695
  1 +   3 CDSi    1316 -    1350 w=   1.25 ORF    1316 -    1348
  1 +   4 CDSi    2080 -    2152 w=   7.14 ORF    2081 -    2152
  1 +   5 CDSi    2333 -    2380 w=   4.17 ORF    2333 -    2380
  1 +   6 CDSi    2721 -    2823 w=   1.58 ORF    2721 -    2822
  1 +   7 CDSi    2858 -    2891 w=  10.24 ORF    2860 -    2889
  1 +   8 CDSi    4234 -    4257 w=   1.28 ORF    4235 -    4255
  1 +   9 CDSi    5834 -    5930 w=   2.38 ORF    5835 -    5930
  1 +  10 CDSi    7091 -    7252 w=   5.64 ORF    7091 -    7252
  1 +  11 CDSi    7979 -    8083 w=   3.34 ORF    7979 -    8083
  1 +  12 CDSi    9218 -    9295 w=   4.43 ORF    9218 -    9295
  1 +  13 CDSi    9569 -    9652 w=   2.21 ORF    9569 -    9652
  1 +  14 CDSi    9726 -    9929 w=   1.68 ORF    9726 -    9929
  1 +  15 CDSi   12136 -   12591 w=  12.10 ORF   12136 -   12591
  1 +  16 CDSi   12989 -   13034 w=   0.15 ORF   12989 -   13033
  1 +  17 CDSi   13730 -   13784 w=  12.80 ORF   13732 -   13782
  1 +  18 CDSi   13931 -   14027 w=   8.45 ORF   13932 -   14027
  1 +  19 CDSi   14686 -   14709 w=   6.98 ORF   14686 -   14709
  1 +  20 CDSi   16979 -   17006 w=   2.05 ORF   16979 -   17005
  1 +  21 CDSi   18867 -   19090 w=   0.45 ORF   18869 -   19090
  1 +  22 CDSi   19670 -   19774 w=  10.50 ORF   19670 -   19774
  1 +  23 CDSi   20075 -   20158 w=   2.29 ORF   20075 -   20158
  1 +  24 CDSi   23132 -   23278 w=   4.54 ORF   23132 -   23278
  1 +  25 CDSi   26678 -   26706 w=   3.51 ORF   26678 -   26704
  1 +  26 CDSl   28017 -   28032 w=   4.85 ORF   28018 -   28029
  1 + Poly-A:  28564 w=   0.07
 
  2 -   1 CDSl   32368 -   32397 w=   4.31 ORF   32371 -   32397
  2 -   2 CDSi   36062 -   36199 w=   2.95 ORF   36062 -   36199
  2 -   3 CDSi   36236 -   36245 w=   0.78 ORF   36236 -   36244
  2 -   4 CDSi   37862 -   37934 w=   3.01 ORF   37864 -   37932
  2 -   5 CDSi   38179 -   38320 w=   6.28 ORF   38180 -   38320
  2 -   6 CDSi   38926 -   39043 w=   8.08 ORF   38926 -   39042
  2 -   7 CDSi   39169 -   39194 w=   1.27 ORF   39171 -   39194
 
  1 Gene with many exons:
     63 -   28032     842 aa Chain: +
QRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKTTPQSAQQSR
LRRENSPSKCQQALLKGPKYGHEERNSGKTEFEEEEKASKQPLIGPITLMTDSFIQEAKL
SQNHNTSNPSECSSAEEHQVRHTRANSTLEADMQSGQRKAIKRNGQTIALVGSSGCGKST
TIQLLQRFYDPQKGSVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKG
VYHGLVTMQVFREKDKEIIREKSSFFCILFAVMGVVTFLTMFLQGFCFSKSGEILTLNLR
LKAFISMMRQDLSWYDNPKNTVGALTTRLAADAAHVQGAAGVRLAVMTQNFANLGTSIII
SFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKKELEMAGKLLDGVDVKQLNVHW
LRSQIGIVSQEPVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVN
QGKWLIPHLIDSHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNP
KLLLLDEATSALDTESEKFPYVTLSIPECLLNSGLSIMALKIDTAETNGDLSHDSKDDGA
KNEKKKKNKKEKPPQEPMVGPITLHVTGGHAKLSKLARHFDDVPQCGGGKYRHVGVICWG
EEPCGKDRLPVVHHQEEVHQRVLVCRVRRNQRGKDRRGAVLSTTQQQKANIRHLVKVFAD
PDRDSVRRKSEFISLMFVVIGCVSFVTMFLQDLSWYDNPQNTVGALTTRLAADAAQVQGR
YDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKIYINELLKWNSR
LC
  2 Gene with many exons:
  32368 -   39194     178 aa Chain: -
PAVHLAQARSPGGDLGAKRKKKKQKRKKEKPSSGGAKSDSASDSQEFKNPTLPIQKLQDI
QRAMELLSCQGPAKSIDEAAKHKYQFWDTQPVPKLMSSLPKGTRCQGKILIETVPLFQTS
ALEKGFDVFNALDLMENKVFLEKLKFGIGDGNLQYYLYNWKCPSMEPDKTLLQQPSDL