Fex output

Finding potential 5'-, internal and 3'-coding exons

Name: Seq_name:all
First three lines of sequence:
TTANGATTCGTTTCCATGGAGCTGCCCATGACCATTTACACCATATACATACTGTCTCTGAGCAGAGATACGACA
CTCAGGCTGGTGATAAGGGAACACAGCTGTCAGGGGGCCAGAAGCAGCGTGTCGCCATAGCCCGAGCCATCATCC
GCAACCCCAAACTGTTGCTCCTGGACGAGGCCACGTCTGCGCTCGACACTGAGAGTGAGAAGGTGAGACTTTATT


fex  Thu Jun  3 19:50:55 CDT 1999
>Seq_name:all                                                                   
 length of sequence -  39951
 # of potential exon:  47
  4133 -   4257 w= 11.23 ORF=  2 Num ORFs  1   4133 -   4255
 17772 -  18230 w= 10.96 ORF=  3 Num ORFs  1  17775 -  18230
 19670 -  19774 w= 10.96 ORF=  2 Num ORFs  1  19670 -  19774
 15913 -  16284 w= 10.71 ORF=  2 Num ORFs  1  15914 -  16282
 12136 -  12591 w= 10.45 ORF=  1 Num ORFs  1  12136 -  12591
  7091 -   7252 w= 10.22 ORF=  2 Num ORFs  1   7091 -   7252
 14431 -  14634 w= 10.22 ORF=  1 Last  exon   14431 -  14631
  9726 -   9929 w=  9.66 ORF=  3 Num ORFs  1   9729 -   9929
  2080 -   2152 w=  9.47 ORF=  2 Num ORFs  1   2081 -   2152
 21566 -  21722 w=  9.29 ORF=  3 Num ORFs  1  21567 -  21722
 17475 -  17600 w=  9.03 ORF=  3 Num ORFs  2  17478 -  17600
  5805 -   5930 w=  8.42 ORF=  3 Num ORFs  1   5808 -   5930
 15232 -  15403 w=  8.00 ORF=  2 Num ORFs  1  15233 -  15403
 32374 -  32760 w=  7.94 ORF=  3 Num ORFs  1  32376 -  32759
 39021 -  39092 w=  7.66 ORF=  3 Last  exon   39021 -  39089
  9232 -   9295 w=  7.19 ORF=  2 Num ORFs  1   9233 -   9295
 36824 -  36911 w=  7.08 ORF=  2 First exon   36824 -  36910
 23088 -  23278 w=  6.93 ORF=  2 Num ORFs  1  23090 -  23278
  3474 -   3924 w=  6.86 ORF=  1 Num ORFs  1   3475 -   3924
 13730 -  13784 w=  6.75 ORF=  1 Num ORFs  1  13732 -  13782
 10031 -  10135 w=  6.68 ORF=  2 Last  exon   10031 -  10132
 23351 -  23557 w=  6.54 ORF=  2 Last  exon   23351 -  23554
 18614 -  18775 w=  6.42 ORF=  2 Num ORFs  1  18614 -  18775
  2629 -   2810 w=  6.23 ORF=  3 Num ORFs  1   2631 -   2810
  4377 -   4548 w=  6.20 ORF=  1 Num ORFs  1   4378 -   4548
 22822 -  22989 w=  6.17 ORF=  1 Last  exon   22822 -  22986
 18867 -  19085 w=  6.15 ORF=  3 Last  exon   18867 -  19082
 23651 -  23722 w=  6.08 ORF=  2 Last  exon   23651 -  23719
  7486 -   7538 w=  6.01 ORF=  3 Num ORFs  1   7488 -   7538
 26678 -  26710 w=  5.92 ORF=  2 Last  exon   26678 -  26707
 36079 -  36221 w=  5.82 ORF=  2 Num ORFs  1  36080 -  36220
 17296 -  17406 w=  5.75 ORF=  1 Num ORFs  2  17296 -  17406
 24736 -  24910 w=  5.61 ORF=  3 Num ORFs  1  24738 -  24908
 11487 -  11714 w=  5.49 ORF=  3 Last  exon   11487 -  11711
   109 -    212 w=  5.34 ORF=  3 Num ORFs  1    111 -    212
  9569 -   9652 w=  5.33 ORF=  2 Num ORFs  2   9569 -   9652
 20522 -  20635 w=  5.32 ORF=  2 Last  exon   20522 -  20632
 20075 -  20158 w=  5.29 ORF=  2 Num ORFs  2  20075 -  20158
 20232 -  20374 w=  5.17 ORF=  2 Last  exon   20234 -  20371
  2296 -   2380 w=  4.91 ORF=  2 Num ORFs  1   2297 -   2380
 31196 -  31212 w=  4.58 ORF=  1 Last  exon   31198 -  31209
 11243 -  11399 w=  4.58 ORF=  3 Num ORFs  1  11244 -  11399
 19853 -  19930 w=  4.52 ORF=  2 Num ORFs  1  19853 -  19930
 35566 -  35623 w=  4.46 ORF=  2 Last  exon   35567 -  35620
  6255 -   6458 w=  4.12 ORF=  3 Num ORFs  1   6258 -   6458
 33349 -  33383 w=  4.07 ORF=  3 Last  exon   33351 -  33380
 16475 -  16512 w=  4.05 ORF=  1 Last  exon   16477 -  16509
 Exon-      1  Amino acid sequence -     41aa
LLTSFTSKEQTAYAKAGAVAAEVLSSIRTVFAFSGQRKAIK
 Exon-      2  Amino acid sequence -    152aa
FIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYD
FIMNLPDVRPHLWLPYLSLAPSRSNANIYIMISEQKFETLVGDRGTQLSGGQKQRIAIAR
ALVRNPKILLLDEATSALDAESETIVQAALDK
 Exon-      3  Amino acid sequence -     35aa
VFADPDRDSVRRKSEFISLMFVVIGCVSFVTMFLQ
 Exon-      4  Amino acid sequence -    123aa
YHKNLRDAKDVGVKKAISSNIAMGFTFLMIYLSYALAFWYGSTLILNFEYTIGNLLTVST
CGSTFRINEGGEGPDKPACTCVSSLRCFLSCLLERSASDRPLRTSRILPAPEEPPIKCTA
SSI
 Exon-      5  Amino acid sequence -    152aa
LLDGVDVKQLNVHWLRSQIGIVSQEPVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANI
HSFIEGLPQVAAVNQGKWLIPHLIDSHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQ
KQRVAIARAIIRNPKLLLLDEATSALDTESEK
 Exon-      6  Amino acid sequence -     54aa
VRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHSQLMEIKGVYHGLVTMQ
 Exon-      7  Amino acid sequence -     67aa
FRFADRWDVVLLISGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWSEFLLEK
MINTNPD
 Exon-      8  Amino acid sequence -     67aa
AGVRLAVMTQNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKLLTGHAAEDKK
ELEMAGK
 Exon-      9  Amino acid sequence -     24aa
CQQALLKGPKYGHEERNSGKTEFE
 Exon-     10  Amino acid sequence -     52aa
VVSAVLYGAMAVGEANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSP
 Exon-     11  Amino acid sequence -     41aa
LNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDPEEGA
 Exon-     12  Amino acid sequence -     41aa
LNDMSFHVRNGQTIALVGSSGCGKSTTIQLLQRFYDPQKGS
 Exon-     13  Amino acid sequence -     57aa
DVYKIQEGIGDKVGLLIQAYTTFITAFIIGFTTGWKLTLVILAVSPALAISAAFFSK
 Exon-     14  Amino acid sequence -    128aa
LMAAAAKSAKKESKRYIPTKTCFTSPFTPKWSPLPQEDMHFILNTLKENFVSIGLVKKEP
KVFRPWRKKKKQEAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALER
NELKLLLV
 Exon-     15  Amino acid sequence -     23aa
PPNPLPDSCTYEHKRTENNGDFG
 Exon-     16  Amino acid sequence -     21aa
KSGEILTLNLRLKAFISMMRQ
 Exon-     17  Amino acid sequence -     29aa
MFLLRWENFTSTSFLGFRERCQYLQKGEE
 Exon-     18  Amino acid sequence -     63aa
AHDHLHHIHTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTE
SEK
 Exon-     19  Amino acid sequence -    150aa
FSIYYSILGFAVLVVAYLQMSLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNT
RLTEWVTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSF
VIGFVHGWKLTLVILAISPVLGLSAALYSK
 Exon-     20  Amino acid sequence -     17aa
LSIMALKIDTAETNGDL
 Exon-     21  Amino acid sequence -     34aa
IATEAIENVRTVVSLTREPTFVALYEENLTVPYK
 Exon-     22  Amino acid sequence -     68aa
VVQEALDQARKGRTCIVVAHRLSTIQNADCIAVFQGGVVVEKGTHQQLIAKKGVYHMLVT
KQMGYHND
 Exon-     23  Amino acid sequence -     54aa
VRLGRTTIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLVTMQ
 Exon-     24  Amino acid sequence -     60aa
GWDILMVTIGVLMAIVNGLVNPLMCIVFGEMTDSFIQEAKLSQNHNTSNPSECSSAEEHQ
 Exon-     25  Amino acid sequence -     57aa
YHKNLEDARDMGIKKGVAANTATGFSFLMIYLSYALAFWYGTTLVLNKEYTIGNLLT
 Exon-     26  Amino acid sequence -     55aa
SLDGVNVKQLNIHWLRSQIGIVSQEPVLFDCSLAENIAYGDNSRSVSMDEIVACC
 Exon-     27  Amino acid sequence -     72aa
TFHNVEEENTAMSELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEEVPCC
QRRSSRKQISDI
 Exon-     28  Amino acid sequence -     23aa
AETSVLLKLATFEHFYKTNLYCC
 Exon-     29  Amino acid sequence -     17aa
TKEEKEKFECDQDNIEE
 Exon-     30  Amino acid sequence -     10aa
IYINELLKWK
 Exon-     31  Amino acid sequence -     47aa
WTFPVVEVILQISISYTKLELLQEHFILHEIQGVENIEPFLSKPHRT
 Exon-     32  Amino acid sequence -     37aa
KPNIDSFSEDGFKPDFIKGDIEFKNIHFNYPSRPEVK
 Exon-     33  Amino acid sequence -     57aa
PPVLSDTVEEAVAVGNHRRHRAQNCGVAHQAGRQHKVSATATAQHRQHGKTSPFLNK
 Exon-     34  Amino acid sequence -     75aa
EKYDGNVLFEDVKFNYPSRPDVPVLQGLNLEVQKGETLALVGSSGCGKSTTIQLLERFYD
PREGRVVRRQQSLFF
 Exon-     35  Amino acid sequence -     34aa
GQKQRVAIARAIIRNPKLLLLDEATSALDTESEK
 Exon-     36  Amino acid sequence -     28aa
DLSWYDNPKNTVGALTTRLAADAAHVQG
 Exon-     37  Amino acid sequence -     37aa
IATEAIENVRTVVSLSREPKFECLYEENLRVPYKYDI
 Exon-     38  Amino acid sequence -     28aa
DLSWYDNPQNTVGALTTRLAADAAQVQG
 Exon-     39  Amino acid sequence -     46aa
CRGAPGDNNAELRQPGHQHHHRLCLRLGADPAHPGRGAPHRGRRSR
 Exon-     40  Amino acid sequence -     28aa
YGSCSDNKNNVEEEEKASKQPLIGPITL
 Exon-     41  Amino acid sequence -      4aa
SKDG
 Exon-     42  Amino acid sequence -     52aa
VVMTMLYGAMAVGEANTYAPNFAKAKISASHLTMLINRQPAIDNLSEEEARL
 Exon-     43  Amino acid sequence -     26aa
GYCFGKSGEILTLKLRLRAFTAMMRQ
 Exon-     44  Amino acid sequence -     18aa
YVKRNAAAAPPRMKRRKS
 Exon-     45  Amino acid sequence -     67aa
FIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKESNAYD
FIMNLPD
 Exon-     46  Amino acid sequence -     10aa
GPDIGEMMSS
 Exon-     47  Amino acid sequence -     11aa
HLADVTQLEPD