Gene Scan output from MIT

GENSCANW output for sequence yhm


GENSCAN 1.0     Date run: 11-Sep-99     Time: 12:20:23

Sequence YHM2 : 39951 bp : 45.84% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:


Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +     66    212  147  2  0   22  100   231 0.960  18.13
 1.02 Intr +    285    474  190  2  1   78  -18   280 0.070  15.56
 1.03 Intr +   2629   2781  153  2  0   51   81   228 0.197  18.44
 1.04 Intr +   2858   2891   34  0  1   62   94    34 0.984  -1.32
 1.05 Intr +   3474   3924  451  0  1   85   94   476 0.913  41.20
 1.06 Intr +   4133   4257  125  1  2   45  113   140 0.999  11.58
 1.07 Intr +   4377   4548  172  0  1  101   74   244 0.999  24.25
 1.08 Intr +   4586   4747  162  1  0  -14   94   236 0.896  14.17
 1.09 Intr +   5608   5718  111  0  0   64   53   115 0.986   6.18
 1.10 Intr +   5805   5930  126  2  0  127   94   165 0.998  21.88
 1.11 Intr +   6255   6458  204  2  0   14   58   472 0.649  36.20
 1.12 Intr +   6543   6713  171  2  0   16   87   258 0.632  18.64
 1.13 Intr +   7091   7252  162  1  0   73   68   227 0.994  19.37
 1.14 Intr +   7344   7538  195  2  0   59   83   205 0.971  16.71
 1.15 Intr +   7753   7899  147  0  0   79   12   199 0.770  11.83
 1.16 Intr +   9203   9295   93  1  0   81  109   -12 0.493   0.36
 1.17 Intr +   9569   9652   84  1  0   47   83   109 0.948   6.32
 1.18 Intr +   9726   9929  204  2  0   66    2   461 0.990  34.70
 1.19 Intr +  10031  10131  101  1  2  100   21   115 0.999   4.91
 1.20 Intr +  10229  10369  141  2  0  102   76   126 0.997  12.27
 1.21 Intr +  11243  11399  157  2  1   61   59   159 0.996  10.31
 1.22 Intr +  11487  11684  198  2  0  107   69   278 0.993  27.35
 1.23 Intr +  12136  12591  456  0  0   50  100   667 0.640  57.52
 1.24 Term +  12664  12870  207  0  0   78   43   296 0.907  21.44
 1.25 PlyA +  13091  13096    6                               1.05

 2.00 Prom +  13698  13737   40                              -6.46
 2.01 Init +  13741  13784   44  0  2   89   83    23 0.800   1.79
 2.02 Intr +  13931  14027   97  2  1   17   50   118 0.695   0.91
 2.03 Intr +  14431  14590  160  0  1  106   64   263 0.991  25.26
 2.04 Intr +  14661  14709   49  1  1   90   93    41 0.998   2.54
 2.05 Intr +  14939  15130  192  2  0   80   26   320 0.996  23.61
 2.06 Intr +  15142  15403  262  1  1    6   69   527 0.940  40.09
 2.07 Intr +  15483  15607  125  2  2   24   34   220 0.951   9.58
 2.08 Intr +  15913  16084  172  1  1   94   74   429 0.990  42.05
 2.09 Intr +  16171  16284  114  0  0   56   83   195 0.989  16.44
 2.10 Intr +  17296  17406  111  0  0   68   37   168 0.994  10.28
 2.11 Intr +  17475  17600  126  2  0  104   68   200 0.751  20.48
 2.12 Intr +  17772  17975  204  2  0   61   58   467 0.649  40.40
 2.13 Intr +  18060  18230  171  2  0   16   87   258 0.631  18.64
 2.14 Intr +  18614  18775  162  1  0   68   60   252 0.985  20.57
 2.15 Intr +  18867  19034  168  2  0   70   40   188 0.999  12.34
 2.16 Intr +  19419  19565  147  2  0   82   43   272 0.999  22.53
 2.17 Intr +  19670  19774  105  1  0   89  111     6 0.914   3.41
 2.18 Intr +  19853  19930   78  1  0   13   99    83 0.757   1.65
 2.19 Intr +  20075  20158   84  1  0   55   83   100 0.969   6.22
 2.20 Intr +  20232  20435  204  2  0   69   44   417 0.991  34.80
 2.21 Intr +  20522  20622  101  1  2   78   18   110 0.956   1.91
 2.22 Intr +  20718  20858  141  0  0   89   76   181 0.999  16.47
 2.23 Intr +  21566  21722  157  2  1   89   54   234 0.999  20.11
 2.24 Intr +  21806  22003  198  1  0   50   69   254 0.889  19.25
 2.25 Intr +  22822  22974  153  0  0   77  -36   371 0.999  23.87
 2.26 Intr +  23132  23278  147  1  0   22  100   231 0.945  18.13
 2.27 Term +  23351  23557  207  1  0  101   54   318 0.999  27.04
 2.28 PlyA +  23697  23702    6                              -3.44

 3.19 PlyA -  23870  23865    6                               1.05
 3.18 Term -  24656  24536  121  1  1   79   53   187 0.999  12.25
 3.17 Intr -  24861  24742  120  2  0   62   80   223 0.981  18.51
 3.16 Intr -  25061  24968   94  0  1   96   69   115 0.999   9.42
 3.15 Intr -  25228  25150   79  1  1  104  105   133 0.999  15.72
 3.14 Intr -  25419  25296  124  2  1   93   85   165 0.993  17.29
 3.13 Intr -  25624  25494  131  1  2   37   64   243 0.865  16.29
 3.12 Intr -  25804  25697  108  1  0   20  109   189 0.985  14.68
 3.11 Intr -  25960  25877   84  1  0   56   61   165 0.996  10.62
 3.10 Intr -  26145  26044  102  0  0   75   76   104 0.974   8.27
 3.09 Intr -  26356  26231  126  1  0   94   21   152 0.998   9.98
 3.08 Intr -  26615  26522   94  1  1   84   86    26 0.951   1.97
 3.07 Intr -  27094  26986  109  2  1   39   67    57 0.443  -1.96
 3.06 Intr -  27298  27174  125  0  2  102   80    82 0.454   9.03
 3.05 Intr -  27607  27399  209  1  2   98   66    94 0.913   6.08
 3.04 Intr -  27793  27669  125  2  2   95   57   136 0.999  11.50
 3.03 Intr -  30358  30296   63  2  0   93   76    21 0.515   0.09
 3.02 Intr -  30561  30444  118  0  1  118   65   171 0.999  17.84
 3.01 Init -  31347  31336   12  0  0   86   99    11 0.954   2.32
 3.00 Prom -  31560  31521   40                              -9.26

 4.00 Prom +  31672  31711   40                              -5.96
 4.01 Sngl +  32379  33164  786  2  0   44   42   395 0.789  26.45
 4.02 PlyA +  33177  33182    6                               1.05

 5.14 PlyA -  33340  33335    6                               1.05
 5.13 Term -  35785  35717   69  1  0   95   50    40 0.517  -1.16
 5.12 Intr -  36001  35885  117  1  0   68   68    38 0.437   0.46
 5.11 Intr -  36199  36062  138  1  0   69   77   206 0.979  18.26
 5.10 Intr -  36443  36276  168  2  0  106   49   124 0.998  10.44
 5.09 Intr -  36700  36488  213  1  0   83   61   267 0.941  22.41
 5.08 Intr -  36892  36784  109  0  1  120   79   114 0.996  13.99
 5.07 Intr -  37257  37087  171  2  0   88   85   130 0.996  11.76
 5.06 Intr -  37465  37349  117  0  0   98   68   214 0.974  19.98
 5.05 Intr -  37641  37550   92  0  2   86   89   206 0.991  19.29
 5.04 Intr -  37866  37748  119  1  2   40   76   135 0.999   7.68
 5.03 Intr -  38320  38179  142  1  1   38   97   173 0.599  13.13
 5.02 Intr -  39043  38926  118  0  1   56  116    39 0.999   3.97
 5.01 Init -  39582  39473  110  0  2   70   72   160 0.817  12.29


Click here to view a gif image of the predicted gene(s) 

Click here for a PostScript image of the predicted gene(s) 


Predicted peptide sequence(s):

Predicted coding sequence(s):


>YHM2|GENSCAN_predicted_peptide_1|1396_aa
RYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATSALDTESEKVVQEALDQARK
GRTCIVVAHRLSTIQNADCIAVFQGGVVVEKGTHQQLIAKKGVYHMLVTKQMDGWDILMV
TIGVLMAIVNGLVNPLMCIVFGEMTDSFIQEAKLSQNHNTSNPRANSTLEADMQRFSIYY
SILGFAVLVVAYLQMSLWTLTAARQAKRIRELFFHGIMQQDISWYDVTETGELNTRLTEW
VTHIIHTPVPVTAGVVVIICGVRFPGAHDVYKIQEGIGDKAGLLIQAASTFITSFVIGFV
HGWKLTLVILAISPVLGLSAALYSKLLTSFTSKEQTAYAKAGAVAAEVLSSIRTVFAFSG
QRKAIKRYHKNLEDARDMGIKKGVAANTATGFSFLMIYLSYALAFWYGTTLVLNKEYTIG
NLLTNKSVAAETVTTCVQMKVFFVVLYGAYIIGQASPNVQSFASARGAAYKVYNIIDHKP
NIDSFSEDGYKPEYIKGDIVFQNIHFSYPSRPEIKILNDMSFHVRNGQTIALVGSSGCGK
STTIQLLQRFYDPQKGSIFIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRL
DVTQEEIERATKESNAYDFIMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILL
LDEATSALDAESETIVQAALDKVRLGRTTIVIAHRLSTIRNADIIAGFSNGEIVEQGTHS
QLMEIKGVYHGLVTMQSFQKLEDLEDSDYEPWVAEKSQLIESFSQSSLQRRRSTRGSLLA
VSEGTKEEKEKFECDQDNIEEDENVPPVSFFKVMRYNVSEWPYILVGTICAMINGAMQPV
FSIIFTEIIMFWGFQGFCFSKSGEILTLNLRLKAFISMMRQDLSWYDNPKNTVGALTTRL
AADAAHVQGAAGVRLAVMTQNFANLGTSIIISFVYGWELTLLILAVVPILAVAGAAEVKL
LTGHAAEDKKELEMAGKIATEAIENVRTVVSLTREPTFVALYEENLTVPYKNSQKKAKIY
GLTYSFSQAMIFFVYAACFRFGAWLIEAGRMDVEGVFLVVMTMLYGAMAVGEANTYAPNF
AKAKISASHLTMLINRQPAIDNLSEEEARLEKYDGNVLFEDVKFNYPSRPDVPVLQGLNL
EVQKGETLALVGSSGCGKSTTIQLLERFYDPREGRVLLDGVDVKQLNVHWLRSQIGIVSQ
EPVLFDCSLAENIAYGDNSRSVSMDEIVAAAKAANIHSFIEGLPQVAAVNQGKWLIPHLI
DSHGAAHDHLHHIQTVSEQRYDTQAGDKGTQLSGGQKQRVAIARAIIRNPKLLLLDEATS
ALDTESEKVVQEALDQARKGRTCIVVAHRLSTIQNADCIAVFQGGVVVEKGTHQQLIAKK
GVYHMLVTKQMGYHSG

>YHM2|GENSCAN_predicted_CDS_1|4191_bp
agatacgacactcaggctggtgataagggaacacagctgtcagggggccagaagcagcgt
gtcgccatagcccgagccatcatccgcaaccccaaactgttgctcctggacgaggccacg
tctgcgctcgacactgagagtgagaaggtggtgcaggaggcgttggaccaggccaggaag
ggcaggacgtgcatcgtcgtagcccaccgtctgtccaccatccagaacgccgactgcatc
gctgtgttccagggaggagtggtggtggaaaaggggacgcaccagcagctgatcgccaag
aagggagtgtaccacatgctggtcaccaaacagatggatggttgggacatcttgatggtc
accatcggagtgctgatggccattgtgaacgggctggtgaatcctctgatgtgtatcgtg
tttggtgagatgactgacagcttcatccaggaagccaaactgtcccaaaaccacaacaca
agcaaccccagagcaaacagcaccttagaagcagatatgcagagattctccatctactac
tccatcttggggtttgctgtgctggtagtggcgtacctgcagatgtctctgtggacccta
acggccgcgcggcaggccaaacgaattcgcgagttgtttttccacggcatcatgcagcag
gacatcagctggtatgacgtgactgagacaggagagctcaacacgcgtctcacagagtgg
gtgacgcacatcatacacactccagttcctgtcacagctggcgtggtcgttatcatatgt
ggtgttcgattccctggtgcgcacgatgtctacaagatccaggagggcatcggtgacaag
gcgggtctgctgatccaggcggcctccacctttatcacttcctttgttattggttttgta
catggatggaagctcaccctggtcatcctggccatcagccctgtgttgggtctctcagct
gccctttacagtaagttgctgacaagcttcaccagtaaagagcagacagcgtacgccaaa
gctggagctgtggcagcggaggtgctatcctccatcaggactgtgtttgccttcagtggc
caaagaaaagccatcaaaagatatcataagaacctggaggatgcgagggacatgggaata
aagaagggagttgctgctaacacggccacaggcttctcctttctgatgatctacctgtcc
tatgctctggccttctggtacgggactactctggtcctcaacaaagagtacaccattgga
aatttactgactaataagagcgttgctgcagaaacagtgaccacgtgtgtccaaatgaag
gtgttcttcgtcgtcctctacggggcatacattattggacaggcctctcccaacgtccag
tcctttgccagtgccagaggagcggcgtataaagtctacaacattatcgaccacaaaccg
aatattgacagcttttcagaggacggatacaagcctgaatacatcaaaggtgacattgta
ttccagaacatccacttcagctacccttcgaggccagaaattaaaatcttaaacgacatg
tcgtttcatgtgaggaacggacagaccattgctttggtggggagcagcggctgtggtaaa
agtaccaccatccagctgctgcagaggttctacgacccccagaaaggatccatatttatc
gacggtcacgacatccgctccctcaacatccgctacctgagagaaatgatcggagtggtc
agccaggagcccgttcttttcgccaccaccatcaccgagaacatcagatacggccgactg
gacgtgacgcaagaggagatcgaacgagccactaaagagtccaacgcttatgacttcatc
atgaaccttccagacaagtttgagacgctggtgggagatcgagggactcagctgagcgga
ggacagaagcagaggatcgccatcgctcgagctctggtccgcaaccctaaaatcctcctg
ctggacgaggccacgtctgccctcgatgctgagagcgagaccatcgtacaggctgctctg
gacaaggtccgactgggtcgcaccaccatcgtcatcgctcaccgactctcgaccatcaga
aacgccgacatcattgctggattcagtaatggtgaaatcgttgagcaggggactcacagc
cagctgatggagataaagggagtctatcatggcctggtgaccatgcagagctttcagaag
ctggaggatctggaagactcagactacgagccctgggtcgctgagaagagccagctgatc
gaatccttctcccagtcctccctgcagaggaggaggtccactagaggctccttgcttgct
gtctcagaaggaacaaaagaggagaaagaaaaatttgagtgcgatcaggacaacatagag
gaggatgagaacgttcctcccgtgtcgttctttaaagtgatgcgttacaacgtttctgag
tggccgtatattttggtaggaaccatctgcgccatgatcaacggtgcgatgcagccagtg
ttcagcatcatcttcaccgagatcattatgttttggggtttccagggtttctgtttcagt
aaatctggagaaattctgaccctgaacctcagactcaaagccttcatatctatgatgaga
caggacctcagctggtacgacaatcccaaaaacaccgttggcgctctcaccactaggctg
gctgccgacgccgcccacgtacaaggagctgcaggggtgcgcctggctgtaatgacgcag
aacttcgccaacctgggcaccagcatcatcatcagcttcgtgtacggctgggagctgacc
ctgctcatcctggccgtggtgcccatcctggctgtggccggagccgctgaggtcaagctg
ctgacaggacacgccgccgaagacaagaaggagctggagatggccggaaagatcgccaca
gaggccatcgagaatgtgagaactgtggtgtccctcaccagagaaccgacatttgtggct
ttatacgaggaaaatctaactgttccatacaagaactcccagaaaaaggccaaaatttat
ggcttaacctactccttctcacaggccatgatcttctttgtttacgctgcctgtttccgc
tttggagcctggctgatcgaagcaggacggatggatgtggagggagtgttccttgtggtt
atgacaatgctgtacggcgccatggctgtcggcgaggccaacacttatgctcccaacttc
gccaaagccaaaatctcagcctcccacctgacgatgctaataaacagacagccggccata
gataatctgtcagaggaggaagcgagactggagaaatacgacggcaacgttctttttgag
gacgtcaagtttaactacccgtcgcggcccgatgtgcctgtactacaagggctgaatctg
gaggtgcaaaagggagaaactctggccttggtgggcagcagcggttgtggaaagagcacc
accatccagctgctggagaggttttatgaccccagagaggggagagtgttgctggacggt
gtcgatgtgaaacagctgaacgttcactggctgaggtctcagatcggcatcgtctcccag
gagccggtgctgttcgactgctccctggctgagaacatcgcctacggagacaacagtcgc
tccgtgtccatggatgagatagtagctgctgctaaagcagccaacatccacagcttcatc
gaagggctgcctcaggtagcggctgtgaatcaggggaaatggttgattccacatttgatc
gattcccatggagctgcccatgaccatttacaccatatacaaactgtctctgagcagaga
tacgacactcaggctggtgataagggaacacagctgtcagggggccagaagcagcgtgtc
gccatagcccgagccatcatccgcaaccccaaactgttgctcctggacgaggccacgtct
gcgctcgacactgagagtgagaaggtggtgcaggaggcgttggaccaggccaggaagggc
aggacgtgcatcgtcgtagcccaccgtctgtccaccatccagaacgccgactgcatcgct
gtgttccagggaggagtggtggtggaaaaggggacgcaccagcagctgatcgccaagaag
ggagtgtaccacatgctggtcaccaaacagatgggctatcacagtggatga

>YHM2|GENSCAN_predicted_peptide_2|1292_aa
MALKIDTAETNGDLSHDSKDDGAKNEKKKKNKKEKPPQEPMVGPITLFRFADRWDVVLLI
SGTVMAMVNGTVMPLMCIVFGEMTDSFIYADMAQHNASGWNSTTTILNSTLQEDMQRFAI
YYSVLGFVVLLAAYMQVSFWTITAGRQVKRIRSLFFHCIMQQEISWFDVNDTGELNTRLT
EEFPASAFTLCTATLGGVDDLMDVLLFSNGSDVYKIQEGIGDKVGLLIQAYTTFITAFII
GFTTGWKLTLVILAVSPALAISAAFFSKVLASFTSKEQTAYAKAGAVAEEVLSAIRTVFA
FSGQTREIERYHKNLRDAKDVGVKKAISSNIAMGFTFLMIYLSYALAFWYGSTLILNFEY
TIGNLLTVFFVVLIGAFSVGQTSPNIQNFASARGAAYKVYSIIDNKPNIDSFSEDGFKPD
FIKGDIEFKNIHFNYPSRPEVKILNNMSLSVKSGQTIALVGSSGCGKSTTIQLLQRFYDP
EEGAVFIDGHDIRSLNIRYLREMIGVVSQEPVLFATTITENIRYGRLDVTQEEIERATKE
SNAYDFIMNLPDKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE
TIVQAALDKVRLGRTTIVVAHRLSTIRNADIIAGFSNGKIVEQGTHSQLMEIKGVYHGLV
TMQTFHNVEEENTAMSELSAGEKSPVEKTVSQSSIIRRKSTRGSSFAASEGTKEEKTEED
EDVPDVSFFKVLHLNIPEWPYILVGLICATINGAMQPVFAILFSKIITVFADPDRDSVRR
KSEFISLMFVVIGCVSFVTMFLQGYCFGKSGEILTLKLRLRAFTAMMRQDLSWYDNPQNT
VGALTTRLAADAAQVQGAAGVRLATIMQNFANLGTSIIIAFVYGWELTLLILAVVPLIAA
AGAAEIKLLAGHAAKDKKELEKAGKIATEAIENVRTVVSLSREPKFECLYEENLRVPYKN
SQKKAHVYGLTYSFSQAMIYFAYAACFRFGAWLIEAGRMDVEGVFLVVSAVLYGAMAVGE
ANTFAPNYAKAKMAASYLMMLINKKPAIDNLSEEGTSPEKYDGNVHFEGVKFNYPSRPDV
TILQGLNLKVKKGETLALVGSSGCGKSTTIQLLERFYDPREGRVSLDGVNVKQLNIHWLR
SQIGIVSQEPVLFDCSLAENIAYGDNSRSVSMDEIRYDTQAGDKGTQLSGGQKQRVAIAR
AIIRNPKLLLLDEATSALDTESEKVVQEALDQARKGRTCIVVAHRLSTIQNADCIAVFQG
GVVVEKGTHQQLIAKKGVYHMLVTKQMGYHND

>YHM2|GENSCAN_predicted_CDS_2|3879_bp
atggccttaaagatcgatacggccgaaacaaacggtgatctgagccatgattccaaggac
gatggtgccaagaatgaaaagaaaaagaagaataaaaaggaaaagccaccacaggagccc
atggtgggccccattactctgttccgatttgcagaccgctgggacgtcgtgctgctcatc
agcgggacagtgatggccatggtcaacggcaccgtgatgcccctcatgtgcattgtcttt
ggagaaatgacggacagttttatatacgctgacatggcccaacacaacgcaagtggctgg
aattctactactactattctgaacagcacgttacaggaggacatgcaaagattcgccatt
tattactccgtcttgggatttgttgtgctgctggccgcctacatgcaggtgtccttctgg
accataacagccgggcgccaggtgaaacgcatccgcagcttgtttttccactgcatcatg
cagcaggagatcagctggtttgacgtgaacgacacaggggagctcaacactcgactgacg
gaagagttcccagcttcagcgttcacgctctgtacggctacgctcggaggtgtagatgat
ctgatggacgtgcttcttttttccaatggcagcgacgtctacaagatccaggagggcatc
ggtgacaaggtggggctgctgatccaggcgtacaccaccttcatcacggccttcatcatc
ggcttcaccacgggctggaaactgacgctggtcatcctggccgtgagccccgcgctggcc
atttcggccgccttcttcagtaaagtgcttgcgtccttcaccagtaaggagcagacggcg
tacgccaaagccggagccgtggcggaggaagtgctgtccgccatcaggaccgtgttcgcc
ttcagtggtcagaccagagagattgagagataccacaagaacctgcgggacgcaaaggac
gtgggagtgaagaaggccatctcctccaacatcgccatgggcttcaccttcctgatgatc
tacctgtcctatgctctggccttctggtacgggagtacgctcatcctgaattttgagtac
accatcggcaatttactgactgtgttttttgtcgtgcttattggagcgttcagcgtcgga
cagacctctccgaacatccagaattttgccagcgcccgaggagccgcctataaagtgtac
agcatcatcgataacaagccaaacattgacagcttttcagaggacggtttcaagccggac
ttcatcaaaggtgacatcgagttcaagaacatccacttcaattacccttcgaggcctgaa
gtcaaaatcttgaacaacatgtctctgagcgtgaagagcggacagaccattgctttggtg
gggagcagcggctgtggcaaaagtaccaccatccagctgctgcagaggttctacgacccc
gaggaaggagctgtatttatcgacggtcacgacatccgctccctcaacatccgctacctg
agagagatgatcggagtggtcagccaggagcccgttcttttcgccaccaccatcaccgag
aacatcagatacggccgactggacgtgacgcaagaggagatcgaacgagccactaaagag
tccaacgcttatgacttcatcatgaaccttccagacaagtttgagacgctggtgggagat
cgagggactcagctgagcggaggacagaagcagaggatcgccatcgctcgagctctggtc
cgcaaccctaaaatcctcctgctggacgaggccacgtctgccctcgatgctgagagcgag
accatcgtacaggctgctctggacaaggtccgactgggtcgcaccaccatcgtggtcgct
caccgactctcgaccatcagaaacgccgacatcattgctggattcagtaatggcaaaatc
gtggagcaggggactcacagccagctgatggagataaagggagtctatcatggcctggtg
accatgcagacgttccacaatgtggaggaggaaaataccgccatgtcggagttatctgct
ggggagaagagccctgtggaaaagaccgtctcccagtcgtccatcatcaggaggaagtcc
accagagggtcctcgtttgccgcgtcagaaggaaccaaagaggaaaagacagaagaggat
gaagacgttcccgacgtgtcgttctttaaagtgctgcatctgaacatccccgagtggccc
tacatccttgtggggctcatctgcgctacgatcaatggagccatgcagccggtcttcgcc
atcctcttctccaagatcatcactgtgtttgcggatccagaccgtgattctgtcaggagg
aagagtgaattcatttctctgatgtttgtcgttattggctgtgtgtcatttgtcaccatg
tttttacagggttactgtttcggtaaatccggagagattctgacgctgaagctgagactc
cgggcgttcacggcgatgatgagacaggacctcagctggtacgacaatccccaaaacacc
gttggcgctctcaccactaggctggctgccgacgccgcccaagtacaaggagctgcaggg
gtgcgcctggcgacaataatgcagaacttcgccaacctgggcaccagcatcatcatcgcc
tttgtttacggctgggagctgaccctgctcatcctggccgtggtgcccctcatcgcggcc
gccggagccgctgagatcaagctgctcgcgggtcacgccgccaaagacaagaaggagctg
gagaaggccggaaagatcgccacagaggccatcgagaacgtcagaaccgtcgtgtccctc
agcagagaaccaaaatttgagtgtttatatgaggagaatctcagagtgccgtacaagaac
tcccagaaaaaggcccacgtgtacggcttaacctactccttctcccaggccatgatctac
tttgcttacgctgcctgtttccgcttcggagcctggctgattgaagcaggacggatggac
gtggagggagtgttcctggtggtttctgcggtgctgtacggcgccatggccgtgggggaa
gctaacacctttgctccgaactacgccaaggccaaaatggctgcttcctacctgatgatg
ctaataaacaagaagcccgccattgataacctctcagaggaggggacgtctccggaaaaa
tacgacggtaatgtgcatttcgagggtgttaaattcaactacccgtcgcggcccgatgtg
accatactccaggggctgaacctgaaggtgaaaaagggagaaactctggccttggtgggc
agcagcggttgtggaaagagcaccaccatccagctgctggagaggttttatgaccccaga
gaggggagagtgtcactggacggtgtcaacgtgaaacagctgaacattcactggctgagg
tctcagatcggcatcgtctcccaggagccggtgctgttcgactgctccctggctgagaac
atcgcctacggagacaacagtcgctccgtgtccatggatgagataagatacgacactcag
gctggtgataagggaacacagctgtcagggggccagaagcagcgtgtcgccatagcccga
gccatcatccgcaaccccaaactgttgctcctggacgaggccacgtctgcgctcgacact
gagagtgagaaggtggtgcaggaggcgttggaccaggccaggaagggcaggacgtgcatc
gtggtagcccaccgtctgtccaccatccagaacgccgactgcatcgctgtgttccaggga
ggagtggtggtggaaaaggggacgcaccagcagctgatcgccaagaagggagtgtaccac
atgctggtcaccaaacagatgggctatcacaacgactga

>YHM2|GENSCAN_predicted_peptide_3|647_aa
MSKQAEFEKIAEDVKKVKTRPTDQELLDLYGLYKQAIVGDVNTDRPGLLDLKGKAKWDAW
ESRKVRPFASEKEFKATEDIVRNFQQGVGKELHQRLLQRAETRRNWMFNTVLSSQLEQWW
LDAAYLEGRSPSQLTVNFAGPAPYLEHCWPPAEGTALERASICSWHMLQYWNLIRTERLA
PQKAGETPLDMDQFRMLYCTCKVPGVTKDAIRSYFKTELEGRCPSHLVVLCRGRIFTFDA
LCDGQILTPPELFRQLSYVRQCCDGNPEGEGVSALTTEERTRWAKAREYLISIDPHNETI
LELIQSSLFTICLDETQPYSTPENYTNLTRESLTGDPTIRWGDKSYNSVVYSDGTFGSNC
DHAPYDAMVLVTMCWYVDQRIQSTGGKWKGVDTVRVLPPPEELVFTVDEKVRSDIGRAKK
QYFESAQDLQVVCYAFTAFGKAAIKQKKLHPDTFIQLAMQLAYFKLHQRPGCCYETAMTR
KFYHGRTETMRPCTVEAVKWCTAMTDPSCEDNAKRKAMQLAFEKHNNLMAEAQEGRGFDR
HLLGLYLIAKEEGRPVPELFLDPLYAKSGGGGNFVLSSSLVGYTTVLGAVAPMVPHGYGF
FYRIREDRIVISISAWKSCRQTDAVSLFNVFSSCLHEMLHLATTSQL

>YHM2|GENSCAN_predicted_CDS_3|1944_bp
atgtccaagcaggcagaatttgagaagattgcagaggatgtgaagaaagtgaagacgagg
ccgacagaccaggagctgctggatctgtatggcctttacaaacaggcaattgttggagac
gtcaatacggacaggccaggacttctggatttaaagggaaaagctaagtgggatgcctgg
gaatccaggaaagttcgtccttttgcgtccgagaaggaattcaaggccacagaggacatt
gtgaggaacttccaacagggtgttggaaaagagctgcaccagaggctcctgcagagagct
gaaaccaggaggaactggatgtttaacactgtgctgtcctcccagctggagcaatggtgg
ttagacgctgcttatctggagggccgcagcccctctcagctgactgtgaacttcgcaggg
ccggcaccttatctggaacactgctggcctcctgccgagggaacagccctggagcgagcc
agtatttgctcgtggcatatgctgcagtactggaatctgatccgcacggagaggttggcg
ccgcagaaagctggcgaaacacctttagatatggaccagttcaggatgctgtactgcacc
tgcaaagtacccggggtgacgaaagacgctattcgtagctactttaaaacagagctcgag
gggaggtgcccttcccatttggtggttctttgtcgtggacgcatcttcacatttgatgcc
ctctgtgatggacaaatactgacgcccccagaactgttcaggcagctgagctacgtgaga
cagtgctgtgatgggaacccagagggggagggagtgagcgctctcactactgaagagagg
acgcgctgggcgaaggcccgagagtatctaataagtattgatccgcacaacgagaccatc
ctggagctcatccagagcagcctgttcaccatatgtctggatgagacgcagccttactcc
actccagagaactacaccaacctcacacgggagtctctcacgggtgatcccaccatccgc
tggggggacaaatcctacaattcagtcgtctattcagatggaacgtttggatccaactgt
gatcacgcgccgtacgacgccatggtgctggtgaccatgtgctggtacgtggaccagcga
attcaaagcaccggaggcaaatggaagggtgtggacacagtcagagtcctgccgcctccc
gaggagctggtgtttactgtggacgaaaaagtccgcagcgacatcggccgtgcgaaaaaa
caatactttgagtcggcgcaggacctgcaggttgtctgttacgccttcacggctttcgga
aaagccgccatcaagcagaaaaagctgcacccggacacgttcatccaactggcgatgcag
ctggcgtactttaaactgcaccagaggccagggtgttgctacgagacagccatgactcgc
aagttctaccacggcaggacggagaccatgaggccctgcaccgtggaggcggtgaaatgg
tgcacggccatgacggacccgtcgtgcgaggacaacgctaagaggaaagccatgcagctg
gcctttgagaaacacaacaacctgatggccgaggcccaggaaggacgaggcttcgacagg
caccttctcggcctgtatctcatcgccaaagaggagggacgtcctgttccggaactcttc
ttagatccgctctatgccaagagtggcggtggcggaaactttgtgctgtcgtccagcctg
gtgggctacaccacagttctgggcgcggtggcgccgatggttccccacggctacggcttc
ttctaccgtatccgagaggacaggattgtgatttccatatcggcctggaagtcctgccgc
cagaccgacgccgtgtccctgttcaacgtcttcagcagctgtctgcacgagatgctgcac
ctggcaacaacgtctcagctctga

>YHM2|GENSCAN_predicted_peptide_4|261_aa
MAAAAKSAKKESKRYIPTKTCFTSPFTPKWSPLPQEDMHFILNTLKENFVSIGLVKKEPK
VFRPWRKKKKQEAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALERN
ELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLP
QERDVFSNVVEAILPKVPPLDVPWLQDTPASIKPDENRGQKRRLETESEEGTPVSSTTLQ
PLKVKKIVPNSARKGKGKKKV

>YHM2|GENSCAN_predicted_CDS_4|786_bp
atggctgctgcagcaaagtctgctaaaaaggaaagcaaaaggtatattcccacaaagacc
tgcttcacttcaccattcacgccaaaatggagcccgctcccgcaagaagacatgcatttc
atcctgaacaccttaaaggaaaactttgtttccatcggacttgtgaaaaaagagccaaag
gtgtttcgtccttggcgtaaaaagaaaaagcaggaagctgctcaatcacaagattcagac
ctccaggtgagccaggatgctgcgagtcaggaacctccaaaacgtggatggacagatgtg
gcagctagaagaaagctggccattggaatcaacgaggtcaccaaagctttggagaggaat
gagctcaaactgctgctagtgtgtaagtgtgtcaagccacaacacatgatggagcacctc
ataacgctgagcacaacgagagacgtccctgcctgccaggtgcctcggctcagccagagt
gtgtcggagcctctggggctaaaaagcgtcctcgccttaggattcagacaatgtctcccc
caagagagggatgtgttcagtaacgtggttgaagccattttacccaaagtgccaccactg
gatgttccctggctccaagatacaccggccagtataaaacctgacgaaaacagaggccag
aagaggaggctcgaaactgagtctgaggaagggacgcctgtctcctccacaactctacaa
cctctcaaagtgaagaaaatagttcccaactctgcgaggaaaggcaaaggaaagaaaaag
gtctaa

>YHM2|GENSCAN_predicted_peptide_5|560_aa
MAEDSESAASQQSLELDDQDTCGIDGDNEEENEHLQGSPGGDLGAKRKKKKQKRKKEKPS
SGGAKSDSASDSQEFKNPTLPIQKLQDIQRAMELLSCQGPAKSIDEAAKHKYQFWDTQPV
PKLNEVVTSHGPIEADKENIRQEPYSLPQGFMWDTLDLGSAEVLKELYTLLNENYVEDDD
NMFRFDYSPNFLKWALRPPGWLPQWHCGVRVSSNKKLVGFISAIPADIRIYDTVKRMVEI
NFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPVSTCRYWHRSLNPRK
LVEVKFSHLSRNMTLQRTMKLYRLPDSTKTPGLRPMERRDIRQVTELLQKFLKRFQLAPS
MTEEEVSHWFLPQDNIIDTYVVEVAGISLKDSDPECLGAGGALTDFASFYTLPSTVMHHP
LHRSLKAAYSFYNVHTQTPLLDLMNDALILAKLKGFDVFNALDLMENKVFLEKLKFGIGD
GNLQYYLYNWKCPSMEPDKPWLPFRSASSFSSRVPQGCYTNTGPKVTTDRGSCHLDMQFA
GRGGDNSSIINILNVKSCYA

>YHM2|GENSCAN_predicted_CDS_5|1683_bp
atggcggaggacagtgaatccgcagctagccagcagagcctggagctggacgaccaggac
acatgcgggatagacggggacaacgaagaggagaatgagcatctgcaagggagtccggga
ggggatttgggggctaaaaggaagaagaagaaacagaagaggaagaaagagaagccgagt
tcggggggagccaagtccgactctgcctctgactcccaggagttcaagaaccctactttg
cccattcagaagctgcaggacattcaacgagccatggagttactctcctgtcagggtcct
gcaaagagcatcgacgaggcggccaagcacaagtaccagttctgggacacgcagcctgta
cccaagttaaacgaggtggtgacgagtcacgggccaatagaggccgacaaagaaaacatt
cgacaggagccatattctttacctcaaggttttatgtgggacacgctggatctgggcagc
gcagaagtgctgaaggagttgtacacgttactgaacgagaactacgtggaggacgacgac
aacatgttcagattcgactattcgccaaactttctcaaatgggctctgcgtccgccgggc
tggctcccccagtggcactgcggcgtgcgagtgtcgtcgaacaagaagctggtgggcttc
atcagcgccattcccgctgacatccgcatctacgacacagtgaagaggatggtggaaatc
aacttcctgtgtgtgcacaagaagctgcgttcgaagcgcgtcgccccggtgctcatcagg
gagatcacgcggagggtgaacctagagggcatatttcaggccgtttacacggcaggagtg
gttctgcccaaacccgtgtccacgtgcaggtactggcaccgttctctgaaccccaggaag
cttgtggaagtgaagttctcccacctgagcagaaacatgaccctgcaacggaccatgaag
ctctacagattaccagacagcacgaagactcccggtctgcggccaatggagaggcgcgac
atccgccaggtcacagagctgctacagaaattcctgaaacgcttccagctcgcaccttcc
atgacggaagaggaggtgtctcactggttcctgccgcaggacaacataattgacacttat
gtagtggaggtagccgggatcagcctgaaggactcagacccagagtgcctcggtgctggg
ggcgcgctgacagactttgctagtttctacactctgccctcgactgtgatgcaccaccct
ctccacaggagcctgaaggccgcctactctttttacaacgttcacacacaaacccctctc
ctggatttgatgaacgacgcactgatcctggccaaactgaaagggttcgatgttttcaac
gccctggatctcatggagaataaagtgttcctggagaagctcaagtttggtataggagat
ggaaatctgcagtattacctctacaactggaaatgtccatctatggagcctgataagccg
tggttgcctttcaggtcggcctcgtccttcagtagcagggttcctcagggctgctacaca
aacactgggccaaaggtcaccacggaccgtggtagttgtcacctggacatgcagttcgct
gggagggggggggacaactcgtcaatcatcaacatcctgaatgtgaagtcatgctatgcc
tga


Explanation

Gn.Ex : gene number, exon number (for reference)
Type  : Init = Initial exon
        Intr = Internal exon
        Term = Terminal exon
        Sngl = Single-exon gene
        Prom = Promoter
        PlyA = poly-A signal
S     : DNA strand (+ = input strand; - = opposite strand)
Begin : beginning of exon or signal (numbered on input strand)
End   : end point of exon or signal (numbered on input strand)
Len   : length of exon or signal (bp)
Fr    : reading frame (a codon ending at x is in frame f = x mod 3)
Ph    : net phase of exon (length mod 3)
I/Ac  : initiation signal or acceptor splice site score (x 10)
Do/T  : donor splice site or termination signal score (x 10)
CodRg : coding region score (x 10)
P     : probability of exon (sum over all parses containing exon)
Tscr  : exon score (depends on length, I/Ac, Do/T and CodRg scores)

Comments

The SCORE of a predicted feature (e.g., exon or splice site) is a
log-odds measure of the quality of the feature based on local sequence
properties. Thus, for example, a predicted donor splice site with
score > 100 is excellent; 50-100 is acceptable; 0-50 is weak; and
below 0 is poor (probably not a real donor site).

The PROBABILITY of a predicted exon is the estimated probability under
GENSCAN's model of genomic sequence structure that the exon is correct.
This probability depends in general on global as well as local sequence
properties.  This information can be used to assess the reliability of the
predicted exon, e.g., it would be better to design PCR primers based on
a predicted exon with probability > 0.95 than one with lower probability.