FASTA search results for open reading frame 4 (32322-33161)
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FASTA searches a protein or DNA sequence data bank
version 3.2t01 December 31, 1998
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
/tmp/fastainput325767: 280 aa
>32322 32322..33161
vs SWISS PROT library
searching /disk2/data/fasta/swissprot36.fasta 0 library
opt E()
< 20 176 0:==
22 0 0: one = represents 110 library sequences
24 0 0:
26 3 2:*
28 15 17:*
30 119 102:*=
32 484 393:===*=
34 1204 1067:=========*=
36 2585 2191:===================*====
38 4171 3620:================================*=====
40 5368 5050:=============================================*===
42 6055 6173:========================================================*
44 6583 6810:===========================================================*
46 6467 6936:===========================================================*
48 6426 6640:===========================================================*
50 5721 6059:===================================================== *
52 5207 5327:================================================*
54 4487 4550:=========================================*
56 3704 3801:==================================*
58 3062 3120:============================*
60 2511 2528:======================*
62 2035 2026:==================*
64 1695 1612:==============*=
66 1296 1274:===========*
68 1019 1002:=========*
70 796 785:=======*
72 632 614:=====*
74 506 478:====*
76 370 372:===*
78 299 289:==*
80 228 225:==*
82 187 172:=*
84 126 136:=*
86 109 105:*
88 93 82:* inset = represents 2 library sequences
90 54 63:*
92 60 49:* :========================*=====
94 29 38:* :=============== *
96 30 29:* :==============*
98 19 23:* :========== *
100 15 17:* :========*
102 15 14:* :======*=
104 8 10:* :====*
106 7 8:* :===*
108 12 6:* :==*===
110 14 5:* :==*====
112 2 4:* :=*
114 3 3:* :=*
116 1 2:* :*
118 1 2:* :*
>120 10 1:* :*====
26840295 residues in 74019 sequences
statistics extrapolated from 50000 to 73837 sequences
Expectation_n fit: rho(ln(x))= 5.6184+/-0.000515; mu= 4.9630+/- 0.029;
mean_var=74.4063+/-14.252, 0's: 138 Z-trim: 44 B-trim: 0 in 0/64
Kolmogorov-Smirnov statistic: 0.0204 (N=29) at 40
FASTA (3.2 December, 1998) function (optimized, BL50 matrix) ktup: 2
join: 36, opt: 24, gap-pen: -12/ -2, width: 16 reg.-scaled
Scan time: 33.910
The best scores are: initn init1 opt z-sc E(73837)
sp|P54066|RS6X_METJA 30S RIBOSOMAL PROTE ( 117) 114 114 135 169.7 0.0089
sp|P55858|RS6X_SULSO 30S RIBOSOMAL PROTE ( 130) 93 93 131 164.4 0.018
sp|P12743|RS6X_HALMA 30S RIBOSOMAL PROTE ( 116) 95 95 105 135.0 0.76
sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTE ( 258) 34 34 106 131.0 1.3
sp|P16824|DUT_HCMVA DEOXYURIDINE 5'-TRIP ( 388) 48 48 105 127.1 2.1
sp|P39990|NHPX_YEAST NHP2/RS6 FAMILY PRO ( 126) 98 98 98 126.4 2.3
sp|P16547|OM45_YEAST MITOCHONDRIAL OUTER ( 393) 63 63 102 123.6 3.3
sp|P32495|NHP2_YEAST HIGH MOBILITY GROUP ( 173) 105 75 97 123.1 3.5
sp|P49196|RS12_CAEEL PROBABLE 40S RIBOSO ( 145) 49 49 95 122.0 4.1
sp|P38827|SET1_YEAST SET1 PROTEIN. (1080) 86 59 106 121.6 4.2
sp|P55769|NHPX_HUMAN NHP2/RS6 FAMILY PRO ( 128) 84 84 91 118.1 6.6
sp|Q21568|NHPX_CAEEL NHP2/RS6 FAMILY PRO ( 128) 74 74 90 117.0 7.7
>>sp|P54066|RS6X_METJA 30S RIBOSOMAL PROTEIN HS6-LIKE. (117 aa)
initn: 114 init1: 114 opt: 135 Z-score: 169.7 expect() 0.0089
Smith-Waterman score: 135; 34.177% identity in 79 aa overlap
80 90 100 110 120 130
32322 KVFRPWRKKKKQEAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALER
.: :. :: .:. : ::::::.::
sp|P54 MAVYVKFKVPEEIQKELLDAVAKAQKIKKGANEVTKAVER
10 20 30 40
140 150 160 170 180 190
32322 NELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCL
. ::... . :::.... :: : . .: : .:.... ::.
sp|P54 GIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS-KQDLGKAAGLEVAASSVAIINE
50 60 70 80 90
200 210 220 230 240 250
32322 PQERDVFSNVVEAILPKVPPLDVPWLQDTPASIKPDENRGQKRRLETESEEGTPVSSTTL
sp|P54 GDAEELKVLIEKVNVLKQ
100 110
>>sp|P55858|RS6X_SULSO 30S RIBOSOMAL PROTEIN HS6-LIKE. (130 aa)
initn: 93 init1: 93 opt: 131 Z-score: 164.4 expect() 0.018
Smith-Waterman score: 131; 25.843% identity in 89 aa overlap
100 110 120 130 140 150
32322 QSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALERNELKLLLVCKCVKPQ
:. : ::.:::.::.. ::... . :.:.
sp|P55 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPE
10 20 30 40 50 60
160 170 180 190 200 210
32322 HMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAIL
... :: : . .: : .....: ::. . : . . .:. ..... .
sp|P55 EIVAHLPLLCDEKKIPYVYVSS-KKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVN
70 80 90 100 110 120
220 230 240 250 260 270
32322 PKVPPLDVPWLQDTPASIKPDENRGQKRRLETESEEGTPVSSTTLQPLKVKKIVPNSARK
sp|P55 EIKGKTSS
130
>>sp|P12743|RS6X_HALMA 30S RIBOSOMAL PROTEIN HS6. (116 aa)
initn: 95 init1: 95 opt: 105 Z-score: 135.0 expect() 0.76
Smith-Waterman score: 105; 34.615% identity in 52 aa overlap
90 100 110 120 130 140
32322 KKQEAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALERNELKLLLVC
:..: .: : ::.::..::. .:..:
sp|P12 PVYVDFDVPADLEDDALEALEVARDTGAVKK---GTNETTKSIERGSAELVFVA
10 20 30 40 50
150 160 170 180 190 200
32322 KCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSN
. :.:.... :. :. . ::
sp|P12 EDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGAAATVIADK
60 70 80 90 100 110
>>sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A. (258 aa)
initn: 34 init1: 34 opt: 106 Z-score: 131.0 expect() 1.3
Smith-Waterman score: 106; 26.087% identity in 138 aa overlap
50 60 70 80 90 100
32322 SPLPQEDMHFILNTLKENFVSIGLVKKEPKVFRPWRKKKKQEAAQSQDSDLQVSQDAASQ
.:. : . .. : ... :. .: :
sp|P35 RQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEA--
60 70 80 90 100 110
110 120 130 140 150 160
32322 EPPKRGWTDVAARRKLAI--GINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRD
.: : : :.. ... :.:.:: .:... .:... . : : ... : .: .
sp|P35 ----EGKT-VEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKME
120 130 140 150 160 170
170 180 190 200 210 220
32322 VPACQVP---RLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAILPKVPPLDVPWL
:: : : ::.. : . . ::: : . ... ::...:::
sp|P35 VPYCIVKGKARLGSIVHKKTA--SVLCLTTVKN--EDKLEFSKILEAIKANFNDKFDEVR
180 190 200 210 220
230 240 250 260 270 280
32322 QDTPASIKPDENRGQKRRLETESEEGTPVSSTTLQPLKVKKIVPNSARKGKGKKKV
sp|P35 KKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT
230 240 250
>>sp|P16824|DUT_HCMVA DEOXYURIDINE 5'-TRIPHOSPHATE NUCLE (388 aa)
initn: 48 init1: 48 opt: 105 Z-score: 127.1 expect() 2.1
Smith-Waterman score: 105; 31.250% identity in 96 aa overlap
120 130 140 150 160 170
32322 RGWTDVAARRKLAIGINEVTKALERNELKLLLVCKC-VKPQHMMEHLITLSTTRDVPACQ
..: .: .. . .:.: :: : ::.
sp|P16 YDKEQHPGEDEASSPLPSPLKVPYKWMPSSFIVKQCHTQLAFYNKHIIWLSRERKVPTS-
80 90 100 110 120 130
180 190 200 210 220 230
32322 VPRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAILPKVPPLDVPWLQDTPASIK
:. :. : :. ... : .:: . . ...:. : .:: ::: :.:: ::
sp|P16 ---LGVSLYIPEGF---FGITFYKCLDAQFVCMPELLESRL-QVPQLDVVNLNDTFQSIF
140 150 160 170 180 190
240 250 260 270 280
32322 PDENRGQKRRLETESEEGTPVSSTTLQPLKVKKIVPNSARKGKGKKKV
: .:.
sp|P16 PGTIEGDIGVFPCFVPEPWQLMNLPPPNEHRFFSLRTRQTLVIGPGHTQTVYFDAAYVHA
200 210 220 230 240 250
>>sp|P39990|NHPX_YEAST NHP2/RS6 FAMILY PROTEIN YEL026W. (126 aa)
initn: 98 init1: 98 opt: 98 Z-score: 126.4 expect() 2.3
Smith-Waterman score: 98; 32.727% identity in 55 aa overlap
90 100 110 120 130 140
32322 QEAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALERNELKLLLVCKC
: :.: : ::.::.:.:. .....
sp|P39 MSAPNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAAD
10 20 30 40 50
150 160 170 180 190 200
32322 VKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVV
.: ... :: : ..:: ::
sp|P39 CEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAV
60 70 80 90 100 110
>>sp|P16547|OM45_YEAST MITOCHONDRIAL OUTER MEMBRANE 45 K (393 aa)
initn: 63 init1: 63 opt: 102 Z-score: 123.6 expect() 3.3
Smith-Waterman score: 102; 29.213% identity in 89 aa overlap
40 50 60 70 80 90
32322 RYIPTKTCFTSPFTPKWSPLPQEDMHFILNTLKENFVSIGLVKKE--PKVFRPWRKKKKQ
.::. ..... .: ::: . : . .
sp|P16 YYNGQEYGSSAPPQLGKLHNIKQGIKEDALSLKDALLGVSQKAREEAPKVTK--RVISPE
40 50 60 70 80 90
100 110 120 130 140
32322 EAAQSQDSDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTK-----ALERNELKLLL
: ::.. . : ..:..:: . :.... :. .::: ...: :..::: .::
sp|P16 EDAQTRKQLGQKAKDSSSQSIFNWGFSEAERRKAIAIGEFDTAKKRFEEAVDRNEKELLS
100 110 120 130 140 150
150 160 170 180 190 200
32322 VCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQERDVF
sp|P16 TVMREKKAALDRASIEYERYGRARDFNELSDKLDQQERNSNPLKRLLKNNTGDANTEEAA
160 170 180 190 200 210
>>sp|P32495|NHP2_YEAST HIGH MOBILITY GROUP-LIKE NUCLEAR (173 aa)
initn: 105 init1: 75 opt: 97 Z-score: 123.1 expect() 3.5
Smith-Waterman score: 97; 25.688% identity in 109 aa overlap
40 50 60 70 80 90
32322 TCFTSPFTPKWSPLPQEDMHFILNTLKENFVSIGLVKKEPKVFRPWRKKKKQEAAQSQDS
:..: .:: : . . . :: . .
sp|P32 MVNGSLGSRETETSAVKMGKDNKEHKESKESKTVDNYEA--RMPA
10 20 30 40
100 110 120 130 140 150
32322 DLQVSQDAASQEPPKRGWTDV--AARRK-LAIGINEVTKALERNELKLLLVCKCVKPQHM
: .. ::.. :. : :.. : . :..::.:::...: :... ..: .
sp|P32 VLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADV
50 60 70 80 90 100
160 170 180 190 200 210
32322 MEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFRQCLPQERDVFSNVVEAILPK
. :. .: ..:: .:
sp|P32 ISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESF
110 120 130 140 150 160
>>sp|P49196|RS12_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S1 (145 aa)
initn: 49 init1: 49 opt: 95 Z-score: 122.0 expect() 4.1
Smith-Waterman score: 95; 29.474% identity in 95 aa overlap
70 80 90 100 110 120
32322 VSIGLVKKEPKVFRPWRKKKKQEAAQSQDSDLQVSQDAASQEP-PKRGWTDVAARRK---
:.::. :..: : :.: .. :
sp|P49 MKAIKILDNFRDVQVAPAAVAQGPMDKEGALRAVLRAAHHA
10 20 30 40
130 140 150 160 170 180
32322 --LAIGINEVTKALERNELKL-LLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVS
:: :..:. :::.. : .. .:. .: .::.. . . :: . ...: .: .. ..
sp|P49 DGLAKGLHETCKALDKREAHFCVLAENCDEPQYV-KLVETLCAEHQIPLIKVAD-KKIIG
50 60 70 80 90
190 200 210 220 230 240
32322 EPLGLKSVLALGFRQCLPQERDVFSNVVEAILPKVPPLDVPWLQDTPASIKPDENRGQKR
: ::
sp|P49 EYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDYFASKN
100 110 120 130 140
>>sp|P38827|SET1_YEAST SET1 PROTEIN. (1080 aa)
initn: 86 init1: 59 opt: 106 Z-score: 121.6 expect() 4.2
Smith-Waterman score: 106; 30.189% identity in 106 aa overlap
10 20 30
32322 VYIIDFGWVVLYLSSLRGLMAAAAKSAKKESKRYIPT
... : :: : . :::.: . ... .
sp|P38 ISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASS-DGKINDAAKAAFSAVRKH-ES
270 280 290 300 310 320
40 50 60 70 80 90
32322 KTCFTSPFTPKWSPLPQEDMHFILNTLKENFVSIGLVKKEPKVFRPWRKKKKQEAAQSQD
. :: : :. . .. : :::.. .:: :. ::: :. . .: :..:: . .
sp|P38 SGCFIMGF--KFEVILNK--HSILNNIISKFVEIN-VKKLQKLQENLKKAKEKEAENEKA
330 340 350 360 370
100 110 120 130 140 150
32322 SDLQVSQDAASQEPPKRGWTDVAARRKLAIGINEVTKALERNELKLLLVCKCVKPQHMME
..:: ..: . . ::
sp|P38 KELQ-GKDITLPKEPKVDTLSHSSGSEKRIPYDLLGVVNNRPVLHVSKIFVAKHRFCVED
380 390 400 410 420 430
280 residues in 1 query sequences
26840295 residues in 74019 library sequences
Tcomplib (4 proc)[version 3.2t01 December 31, 1998]
start: Fri May 28 19:08:51 1999 done: Fri May 28 19:09:11 1999
Scan time: 33.910 Display time: 0.110
Function used was FASTA
[ GCG
| w2h
| Staden
| GeneExplorer ]
Last modified: Fri, 28 May 1999,
office@cbi.pku.edu.cn