FASTA search results for open reading frame 3 (17772-18374)
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FASTA searches a protein or DNA sequence data bank
version 3.2t01 December 31, 1998
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
/tmp/fastainput446641: 201 aa
>17772 17772..18374
vs SWISS PROT library
searching /disk2/data/fasta/swissprot36.fasta 0 library
opt E()
< 20 177 0:==
22 1 0:= one = represents 112 library sequences
24 0 0:
26 4 2:*
28 20 17:*
30 121 101:*=
32 441 392:===*
34 1274 1062:=========*==
36 2532 2181:===================*===
38 3945 3604:================================*===
40 5424 5027:============================================*====
42 6292 6145:======================================================*==
44 6697 6778:===========================================================*
46 6340 6904:========================================================= *
48 6166 6610:======================================================== *
50 5411 6031:================================================= *
52 5067 5302:============================================== *
54 4624 4529:========================================*=
56 3823 3783:=================================*=
58 3059 3106:===========================*
60 2532 2516:======================*
62 2136 2017:==================*=
64 1723 1604:==============*=
66 1358 1268:===========*=
68 1056 997:========*=
70 765 782:======*
72 630 611:=====*
74 518 476:====*
76 344 371:===*
78 296 288:==*
80 199 224:=*
82 147 171:=*
84 120 136:=*
86 72 105:*
88 70 81:* inset = represents 8 library sequences
90 56 63:*
92 48 49:* :======*
94 27 38:* :====*
96 23 29:* :===*
98 17 23:* :==*
100 20 17:* :==*
102 13 13:* :=*
104 7 10:* :=*
106 14 8:* :*=
108 7 6:* :*
110 3 5:* :*
112 3 4:* :*
114 1 3:* :*
116 2 2:* :*
118 6 2:* :*
>120 388 1:*=== :*=======================================
26840295 residues in 74019 sequences
statistics extrapolated from 50000 to 73496 sequences
Expectation_n fit: rho(ln(x))= 5.9746+/-0.000516; mu= 0.4499+/- 0.029;
mean_var=72.5561+/-14.584, 0's: 143 Z-trim: 227 B-trim: 1955 in 1/63
Kolmogorov-Smirnov statistic: 0.0207 (N=29) at 42
FASTA (3.2 December, 1998) function (optimized, BL50 matrix) ktup: 2
join: 36, opt: 24, gap-pen: -12/ -2, width: 16 reg.-scaled
Scan time: 27.740
The best scores are: initn init1 opt z-sc E(73496)
sp|P21447|MDR3_MOUSE MULTIDRUG RESISTANC (1276) 635 347 349 409.0 4.1e-16
sp|P06795|MDR1_MOUSE MULTIDRUG RESISTANC (1276) 635 347 349 409.0 4.1e-16
sp|Q08201|MDR2_RAT MULTIDRUG RESISTANCE (1278) 606 337 345 404.3 7.6e-16
sp|P21448|MDR1_CRIGR MULTIDRUG RESISTANC (1276) 605 341 343 402.0 1e-15
sp|P21449|MDR2_CRIGR MULTIDRUG RESISTANC (1276) 605 341 343 402.0 1e-15
sp|P21440|MDR2_MOUSE MULTIDRUG RESISTANC (1276) 607 337 343 402.0 1e-15
sp|P43245|MDR1_RAT MULTIDRUG RESISTANCE (1277) 629 341 343 402.0 1e-15
sp|P21439|MDR3_HUMAN MULTIDRUG RESISTANC (1279) 577 331 341 399.6 1.4e-15
sp|P23174|MDR3_CRIGR MULTIDRUG RESISTANC (1281) 602 331 340 398.4 1.6e-15
sp|P08183|MDR1_HUMAN MULTIDRUG RESISTANC (1280) 596 332 338 396.1 2.2e-15
sp|P34712|MDR1_CAEEL MULTIDRUG RESISTANC (1321) 503 323 329 385.3 8.7e-15
sp|Q00748|MDR5_DROME MULTIDRUG RESISTANC (1302) 485 287 320 374.8 3.3e-14
sp|P34713|MDR3_CAEEL MULTIDRUG RESISTANC (1254) 467 269 271 317.6 5.1e-11
sp|P36619|PMD1_SCHPO LEPTOMYCIN B RESIST (1362) 448 269 271 317.0 5.5e-11
sp|Q00449|MDR4_DROME MULTIDRUG RESISTANC (1302) 493 264 267 312.6 9.7e-11
sp|Q06034|MDR1_LEIEN MULTIDRUG RESISTANC (1280) 412 250 265 310.4 1.3e-10
sp|P22638|HEPA_ANASP HETEROCYST DIFFEREN ( 532) 231 231 255 304.8 2.6e-10
sp|P55122|HLYB_PASSP LEUKOTOXIN SECRETIO ( 708) 340 211 252 299.3 5.4e-10
sp|P27299|MSBA_ECOLI PROBABLE TRANSPORT ( 582) 320 208 249 297.1 7.1e-10
sp|P44407|MSBA_HAEIN PROBABLE TRANSPORT ( 587) 326 216 249 297.1 7.1e-10
sp|P16532|HLYB_PASHA LEUKOTOXIN SECRETIO ( 708) 335 211 249 295.8 8.4e-10
sp|P10089|HLY2_ECOLI HEMOLYSIN SECRETION ( 707) 333 211 247 293.4 1.1e-09
sp|P23702|HLYB_ACTAC LEUKOTOXIN SECRETIO ( 707) 333 208 247 293.4 1.1e-09
sp|P08716|HLYB_ECOLI HEMOLYSIN SECRETION ( 707) 333 211 247 293.4 1.1e-09
sp|P11599|HLYB_PROVU HEMOLYSIN SECRETION ( 707) 329 211 246 292.3 1.3e-09
sp|Q57180|YA51_HAEIN HYPOTHETICAL ABC TR ( 614) 353 223 245 292.1 1.4e-09
sp|Q04473|RT3B_ACTPL RTX-III TOXIN DETER ( 711) 326 204 245 291.0 1.5e-09
sp|P26760|RT1B_ACTPL RTX-I TOXIN DETERMI ( 707) 328 211 244 289.9 1.8e-09
sp|P55469|Y4GM_RHISN PROBABLE ABC TRANSP ( 586) 235 235 241 287.7 2.4e-09
sp|Q02592|HMT1_SCHPO HEAVY METAL TOLERAN ( 830) 382 221 240 284.1 3.8e-09
sp|P45861|YWJA_BACSU HYPOTHETICAL ABC TR ( 575) 379 208 237 283.1 4.3e-09
sp|P13568|MDR_PLAFF MULTIDRUG RESISTANCE (1419) 362 223 241 281.5 5.3e-09
sp|P18770|CYAB_BORPE CYCLOLYSIN SECRETIO ( 712) 312 176 233 276.9 9.4e-09
sp|P33310|MDL1_YEAST ATP-DEPENDENT PERME ( 695) 321 211 232 275.9 1.1e-08
sp|Q03519|TAP2_HUMAN ANTIGEN PEPTIDE TRA ( 686) 299 200 227 270.2 2.3e-08
sp|P22520|CVAB_ECOLI COLICIN V SECRETION ( 698) 215 215 226 268.9 2.7e-08
sp|P36372|TAP2_RAT ANTIGEN PEPTIDE TRANS ( 703) 302 184 225 267.6 3.1e-08
sp|P18767|NDVA_RHIME BETA-(1-->2)GLUCAN ( 616) 305 181 224 267.4 3.2e-08
sp|P18768|CHVA_AGRTU BETA-(1-->2)GLUCAN ( 588) 327 209 223 266.5 3.6e-08
sp|P33311|MDL2_YEAST ATP-DEPENDENT PERME ( 820) 324 198 223 264.2 4.8e-08
sp|Q03518|TAP1_HUMAN ANTIGEN PEPTIDE TRA ( 748) 303 175 221 262.5 6e-08
sp|P54718|YFIB_BACSU HYPOTHETICAL ABC TR ( 573) 306 180 218 260.9 7.4e-08
sp|P36370|TAP1_RAT ANTIGEN PEPTIDE TRANS ( 725) 321 197 218 259.2 9.2e-08
sp|P36371|TAP2_MOUSE ANTIGEN PEPTIDE TRA ( 702) 297 178 217 258.3 1e-07
sp|P54719|YFIC_BACSU HYPOTHETICAL ABC TR ( 604) 211 211 216 258.1 1.1e-07
sp|P21958|TAP1_MOUSE ANTIGEN PEPTIDE TRA ( 724) 323 191 216 256.9 1.2e-07
sp|P97998|MDL1_CANAL ATP-DEPENDENT PERME ( 685) 362 200 211 251.4 2.5e-07
sp|Q57213|YE74_HAEIN HYPOTHETICAL ABC TR ( 199) 190 190 203 250.7 2.7e-07
sp|P40416|ATM1_YEAST MITOCHONDRIAL TRANS ( 690) 317 173 208 247.8 4e-07
sp|P16875|MDR1_ENTHI MULTIDRUG RESISTANC ( 114) 248 159 197 247.5 4.1e-07
>>sp|P21447|MDR3_MOUSE MULTIDRUG RESISTANCE PROTEIN 3 (P (1276 aa)
initn: 635 init1: 347 opt: 349 Z-score: 409.0 expect() 4.1e-16
Smith-Waterman score: 598; 66.452% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.:::::.:::::::::::
sp|P21 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: :::..:::.:.::.:::::::.::
sp|P21 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
..:.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P21 -----HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P21 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAG
570 580 590 600 610 620
>>sp|P06795|MDR1_MOUSE MULTIDRUG RESISTANCE PROTEIN 1 (P (1276 aa)
initn: 635 init1: 347 opt: 349 Z-score: 409.0 expect() 4.1e-16
Smith-Waterman score: 598; 66.452% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.:::::.:::::::::::
sp|P06 QTVALVGNSGCGKSTTVQLMQRLYDPLEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: :::..:::.:.::.:::::::.::
sp|P06 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
..:.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P06 -----HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560 570
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P06 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTRG
580 590 600 610 620 630
>>sp|Q08201|MDR2_RAT MULTIDRUG RESISTANCE PROTEIN 2 (P-G (1278 aa)
initn: 606 init1: 337 opt: 345 Z-score: 404.3 expect() 7.6e-16
Smith-Waterman score: 574; 65.161% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.: :::.:::::::::::
sp|Q08 QTVALVGNSGCGKSTTVQLLQRLYDPTEGTISIDGQDIRNFNVRCLREFIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
.:::.::::::: .::..::..:.::.:::::::.::
sp|Q08 STTIAENIRYGRGNVTMDEIKKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
:::.:::::::.:::::::::::::::::::::::::::::::::.:::. ::::
sp|Q08 -----QKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAA
520 530 540 550 560 570
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|Q08 LDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELIKKEGIYFRLVNMQTSG
580 590 600 610 620 630
>>sp|P21448|MDR1_CRIGR MULTIDRUG RESISTANCE PROTEIN 1 (P (1276 aa)
initn: 605 init1: 341 opt: 343 Z-score: 402.0 expect() 1e-15
Smith-Waterman score: 596; 66.452% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.:::::.:::::::::::
sp|P21 QTVALVGNSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P21 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P21 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P21 LDKAREGRTTIVIAHRLSTVRNADIIAGFDGGVIVEQGNHEELMREKGIYFKLVMTQTAG
570 580 590 600 610 620
>>sp|P21449|MDR2_CRIGR MULTIDRUG RESISTANCE PROTEIN 2 (P (1276 aa)
initn: 605 init1: 341 opt: 343 Z-score: 402.0 expect() 1e-15
Smith-Waterman score: 596; 66.452% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.:::::.:::::::::::
sp|P21 QTVALVGKSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P21 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P21 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560 570
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P21 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEKGIYCRLVMMQTRG
580 590 600 610 620 630
>>sp|P21440|MDR2_MOUSE MULTIDRUG RESISTANCE PROTEIN 2 (P (1276 aa)
initn: 607 init1: 337 opt: 343 Z-score: 402.0 expect() 1e-15
Smith-Waterman score: 581; 65.806% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.: :::.:::::::::::
sp|P21 QTVALVGNSGCGKSTTVQLLQRLYDPTEGKISIDGQDIRNFNVRCLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
.:::.::::::: .::..:::.:.::.:::::::.::
sp|P21 STTIAENIRYGRGNVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
:::.:::::::.:::::::::::::::::::::::::::::::::.:::. ::::
sp|P21 -----QKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAA
520 530 540 550 560 570
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P21 LDKAREGRTTIVIAHRLSTIRNADVIAGFEDGVIVEQGSHSELMKKEGIYFRLVNMQTAG
580 590 600 610 620 630
>>sp|P43245|MDR1_RAT MULTIDRUG RESISTANCE PROTEIN 1 (P-G (1277 aa)
initn: 629 init1: 341 opt: 343 Z-score: 402.0 expect() 1e-15
Smith-Waterman score: 596; 66.452% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.:::::.:::::::::::
sp|P43 QTVALVGNSGCGKSTTVQLLQRLYDPIEGEVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P43 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P43 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560 570
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P43 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEKGIYFKLVMTQTRG
580 590 600 610 620 630
>>sp|P21439|MDR3_HUMAN MULTIDRUG RESISTANCE PROTEIN 3 (P (1279 aa)
initn: 577 init1: 331 opt: 341 Z-score: 399.6 expect() 1.4e-15
Smith-Waterman score: 555; 64.052% identity in 153 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLFAT
:::.:::..:. ::::.:::::::::::.:
sp|P21 VALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLFST
430 440 450 460 470 480
40 50 60 70 80 90
17772 TITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIYIM
::.::: ::: .::..::..:.::.:::.:::.::
sp|P21 TIAENICYGRGNVTMDEIKKAVKEANAYEFIMKLP-------------------------
490 500 510
100 110 120 130 140 150
17772 ISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAALD
:::.::::.::.:::::::::::::::::::::::::::::::::.:::. ::::::
sp|P21 ---QKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAALD
520 530 540 550 560 570
160 170 180 190 200
17772 KVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:..
sp|P21 KAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMKKEGVYFKLVNMQTSGSQ
580 590 600 610 620 630
>>sp|P23174|MDR3_CRIGR MULTIDRUG RESISTANCE PROTEIN 3 (P (1281 aa)
initn: 602 init1: 331 opt: 340 Z-score: 398.4 expect() 1.6e-15
Smith-Waterman score: 579; 65.161% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.:::::.:::::::::::
sp|P23 QTVALVGNSGCGKTTTLQLLQRLYDPTEGTISIDGQDIRNFNVRYLREIIGVVSQEPVLF
430 440 450 460 470 480
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
.:::.::::::: .::.:::..:.::.:::.:::.::
sp|P23 STTIAENIRYGRGNVTMEEIKKAVKEANAYEFIMKLP-----------------------
490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
:::.::::.::.:::::::::::::::::::::::::::::::::.:::. ::::
sp|P23 -----QKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAA
520 530 540 550 560 570
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P23 LDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMQKEGVYFKLVNMQTSG
580 590 600 610 620 630
>>sp|P08183|MDR1_HUMAN MULTIDRUG RESISTANCE PROTEIN 1 (P (1280 aa)
initn: 596 init1: 332 opt: 338 Z-score: 396.1 expect() 2.2e-15
Smith-Waterman score: 586; 64.516% identity in 155 aa overlap
10 20 30
17772 VFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: .::.:::..:.:.:::.:::::::::::
sp|P08 QTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLF
430 440 450 460 470 480
40 50 60 70 80 90
17772 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P08 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
490 500 510
100 110 120 130 140 150
17772 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::.:
sp|P08 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVA
520 530 540 550 560 570
160 170 180 190 200
17772 LDKVQTQTCSPSPCRTQPLDLKDISQYGQYVFSGVLSPSTLESMNQNVTSC
:::..
sp|P08 LDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAG
580 590 600 610 620 630
201 residues in 1 query sequences
26840295 residues in 74019 library sequences
Tcomplib (4 proc)[version 3.2t01 December 31, 1998]
start: Fri May 28 19:15:42 1999 done: Fri May 28 19:16:00 1999
Scan time: 27.740 Display time: 0.280
Function used was FASTA
[ GCG
| w2h
| Staden
| GeneExplorer ]
Last modified: Fri, 28 May 1999,
office@cbi.pku.edu.cn