FASTA Search results
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Open reading frame 2 (6255-6887)
FASTA searches a protein or DNA sequence data bank
version 3.2t01 December 31, 1998
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
/tmp/fastainput376423: 211 aa
>6255 6255..6887
vs SWISS PROT library
searching /disk2/data/fasta/swissprot36.fasta 0 library
opt E()
< 20 176 0:==
22 0 0: one = represents 114 library sequences
24 0 0:
26 3 2:*
28 14 17:*
30 91 101:*
32 437 391:===*
34 1247 1062:=========*=
36 2457 2180:===================*==
38 3979 3604:===============================*===
40 5515 5027:============================================*====
42 6471 6144:=====================================================*===
44 6808 6778:===========================================================*
46 6323 6903:======================================================== *
48 6314 6609:======================================================== *
50 5508 6031:================================================= *
52 4965 5302:============================================ *
54 4351 4529:=======================================*
56 3828 3783:=================================*
58 3060 3106:===========================*
60 2529 2516:======================*
62 2193 2017:=================*==
64 1730 1604:==============*=
66 1358 1268:===========*
68 1012 997:========*
70 731 782:======*
72 611 611:=====*
74 469 476:====*
76 339 371:===*
78 267 288:==*
80 218 224:=*
82 146 171:=*
84 106 136:=*
86 76 105:*
88 86 81:* inset = represents 8 library sequences
90 44 63:*
92 49 49:* :======*
94 26 38:* :====*
96 14 29:* :== *
98 27 23:* :==*=
100 11 17:* :==*
102 7 13:* :=*
104 6 10:* :=*
106 8 8:* :*
108 6 6:* :*
110 4 5:* :*
112 1 4:* :*
114 2 3:* :*
116 3 2:* :*
118 5 2:* :*
>120 388 1:*=== :*=======================================
26840295 residues in 74019 sequences
statistics extrapolated from 50000 to 73492 sequences
Expectation_n fit: rho(ln(x))= 5.8877+/-0.000515; mu= 1.3367+/- 0.029;
mean_var=74.4164+/-14.677, 0's: 142 Z-trim: 230 B-trim: 0 in 0/64
Kolmogorov-Smirnov statistic: 0.0232 (N=29) at 44
FASTA (3.2 December, 1998) function (optimized, BL50 matrix) ktup: 2
join: 36, opt: 24, gap-pen: -12/ -2, width: 16 reg.-scaled
Scan time: 28.470
The best scores are: initn init1 opt z-sc E(73492)
sp|P21447|MDR3_MOUSE MULTIDRUG RESISTANC (1276) 635 347 348 403.0 8.9e-16
sp|P06795|MDR1_MOUSE MULTIDRUG RESISTANC (1276) 635 347 348 403.0 8.9e-16
sp|Q08201|MDR2_RAT MULTIDRUG RESISTANCE (1278) 606 337 345 399.6 1.4e-15
sp|P21440|MDR2_MOUSE MULTIDRUG RESISTANC (1276) 607 337 343 397.3 1.9e-15
sp|P21449|MDR2_CRIGR MULTIDRUG RESISTANC (1276) 605 341 342 396.1 2.2e-15
sp|P21448|MDR1_CRIGR MULTIDRUG RESISTANC (1276) 605 341 342 396.1 2.2e-15
sp|P43245|MDR1_RAT MULTIDRUG RESISTANCE (1277) 629 341 342 396.1 2.2e-15
sp|P21439|MDR3_HUMAN MULTIDRUG RESISTANC (1279) 577 331 341 394.9 2.5e-15
sp|P23174|MDR3_CRIGR MULTIDRUG RESISTANC (1281) 602 331 340 393.7 2.9e-15
sp|P08183|MDR1_HUMAN MULTIDRUG RESISTANC (1280) 596 332 337 390.3 4.6e-15
sp|P34712|MDR1_CAEEL MULTIDRUG RESISTANC (1321) 503 323 332 384.3 9.9e-15
sp|Q00748|MDR5_DROME MULTIDRUG RESISTANC (1302) 485 287 302 349.6 8.5e-13
sp|Q00449|MDR4_DROME MULTIDRUG RESISTANC (1302) 493 264 278 321.8 3e-11
sp|P36619|PMD1_SCHPO LEPTOMYCIN B RESIST (1362) 433 269 273 315.7 6.6e-11
sp|P34713|MDR3_CAEEL MULTIDRUG RESISTANC (1254) 467 269 270 312.7 9.6e-11
sp|Q06034|MDR1_LEIEN MULTIDRUG RESISTANC (1280) 413 247 265 306.8 2e-10
sp|P22638|HEPA_ANASP HETEROCYST DIFFEREN ( 532) 256 231 255 301.2 4.2e-10
sp|P55122|HLYB_PASSP LEUKOTOXIN SECRETIO ( 708) 340 211 253 296.9 7.3e-10
sp|P44407|MSBA_HAEIN PROBABLE TRANSPORT ( 587) 320 210 250 294.7 9.6e-10
sp|P27299|MSBA_ECOLI PROBABLE TRANSPORT ( 582) 320 208 249 293.6 1.1e-09
sp|P55469|Y4GM_RHISN PROBABLE ABC TRANSP ( 586) 235 235 249 293.6 1.1e-09
sp|P16532|HLYB_PASHA LEUKOTOXIN SECRETIO ( 708) 335 211 250 293.5 1.1e-09
sp|P23702|HLYB_ACTAC LEUKOTOXIN SECRETIO ( 707) 333 208 249 292.3 1.3e-09
sp|P10089|HLY2_ECOLI HEMOLYSIN SECRETION ( 707) 348 226 247 290.0 1.8e-09
sp|P08716|HLYB_ECOLI HEMOLYSIN SECRETION ( 707) 348 226 247 290.0 1.8e-09
sp|Q04473|RT3B_ACTPL RTX-III TOXIN DETER ( 711) 326 204 245 287.6 2.4e-09
sp|Q57180|YA51_HAEIN HYPOTHETICAL ABC TR ( 614) 353 223 244 287.5 2.4e-09
sp|P11599|HLYB_PROVU HEMOLYSIN SECRETION ( 707) 344 226 244 286.5 2.8e-09
sp|P26760|RT1B_ACTPL RTX-I TOXIN DETERMI ( 707) 328 211 244 286.5 2.8e-09
sp|Q02592|HMT1_SCHPO HEAVY METAL TOLERAN ( 830) 382 221 244 285.4 3.2e-09
sp|P18770|CYAB_BORPE CYCLOLYSIN SECRETIO ( 712) 312 176 240 281.8 5e-09
sp|P45861|YWJA_BACSU HYPOTHETICAL ABC TR ( 575) 379 208 237 279.8 6.5e-09
sp|P33311|MDL2_YEAST ATP-DEPENDENT PERME ( 820) 324 198 239 279.7 6.6e-09
sp|P22520|CVAB_ECOLI COLICIN V SECRETION ( 698) 215 215 238 279.7 6.7e-09
sp|P13568|MDR_PLAFF MULTIDRUG RESISTANCE (1419) 362 223 241 278.3 7.9e-09
sp|P33310|MDL1_YEAST ATP-DEPENDENT PERME ( 695) 321 211 232 272.7 1.6e-08
sp|P18767|NDVA_RHIME BETA-(1-->2)GLUCAN ( 616) 305 181 228 268.9 2.6e-08
sp|Q03519|TAP2_HUMAN ANTIGEN PEPTIDE TRA ( 686) 299 200 227 267.0 3.4e-08
sp|P18768|CHVA_AGRTU BETA-(1-->2)GLUCAN ( 588) 327 209 225 265.8 4e-08
sp|P36372|TAP2_RAT ANTIGEN PEPTIDE TRANS ( 703) 302 184 225 264.5 4.6e-08
sp|P54719|YFIC_BACSU HYPOTHETICAL ABC TR ( 604) 211 211 217 256.3 1.3e-07
sp|Q03518|TAP1_HUMAN ANTIGEN PEPTIDE TRA ( 748) 291 163 218 256.0 1.4e-07
sp|P36371|TAP2_MOUSE ANTIGEN PEPTIDE TRA ( 702) 297 178 217 255.3 1.5e-07
sp|P36370|TAP1_RAT ANTIGEN PEPTIDE TRANS ( 725) 320 196 216 253.9 1.8e-07
sp|P54718|YFIB_BACSU HYPOTHETICAL ABC TR ( 573) 306 180 213 252.0 2.3e-07
sp|P97998|MDL1_CANAL ATP-DEPENDENT PERME ( 685) 362 200 211 248.5 3.6e-07
sp|P21958|TAP1_MOUSE ANTIGEN PEPTIDE TRA ( 724) 322 190 210 246.9 4.4e-07
sp|P75094|Y015_MYCPN HYPOTHETICAL ABC TR ( 634) 189 189 208 245.5 5.3e-07
sp|P16875|MDR1_ENTHI MULTIDRUG RESISTANC ( 114) 248 159 196 243.3 7e-07
sp|P23858|POTA_ECOLI SPERMIDINE/PUTRESCI ( 378) 198 166 203 243.3 7.1e-07
>>sp|P21447|MDR3_MOUSE MULTIDRUG RESISTANCE PROTEIN 3 (P (1276 aa)
initn: 635 init1: 347 opt: 348 Z-score: 403.0 expect() 8.9e-16
Smith-Waterman score: 597; 65.806% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.:::::.:::::::::::
sp|P21 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: :::..:::.:.::.:::::::.::
sp|P21 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
..:.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P21 -----HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P21 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAG
570 580 590 600 610 620
>>sp|P06795|MDR1_MOUSE MULTIDRUG RESISTANCE PROTEIN 1 (P (1276 aa)
initn: 635 init1: 347 opt: 348 Z-score: 403.0 expect() 8.9e-16
Smith-Waterman score: 597; 65.806% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.:::::.:::::::::::
sp|P06 QTVALVGNSGCGKSTTVQLMQRLYDPLEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: :::..:::.:.::.:::::::.::
sp|P06 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
..:.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P06 -----HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P06 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTRG
580 590 600 610 620 630
>>sp|Q08201|MDR2_RAT MULTIDRUG RESISTANCE PROTEIN 2 (P-G (1278 aa)
initn: 606 init1: 337 opt: 345 Z-score: 399.6 expect() 1.4e-15
Smith-Waterman score: 575; 65.806% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.: :::.:::::::::::
sp|Q08 QTVALVGNSGCGKSTTVQLLQRLYDPTEGTISIDGQDIRNFNVRCLREFIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
.:::.::::::: .::..::..:.::.:::::::.::
sp|Q08 STTIAENIRYGRGNVTMDEIKKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
:::.:::::::.:::::::::::::::::::::::::::::::::.:::. ::::
sp|Q08 -----QKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|Q08 LDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELIKKEGIYFRLVNMQTSG
580 590 600 610 620 630
>>sp|P21440|MDR2_MOUSE MULTIDRUG RESISTANCE PROTEIN 2 (P (1276 aa)
initn: 607 init1: 337 opt: 343 Z-score: 397.3 expect() 1.9e-15
Smith-Waterman score: 582; 66.452% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.: :::.:::::::::::
sp|P21 QTVALVGNSGCGKSTTVQLLQRLYDPTEGKISIDGQDIRNFNVRCLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
.:::.::::::: .::..:::.:.::.:::::::.::
sp|P21 STTIAENIRYGRGNVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
:::.:::::::.:::::::::::::::::::::::::::::::::.:::. ::::
sp|P21 -----QKFDTLVGDRGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P21 LDKAREGRTTIVIAHRLSTIRNADVIAGFEDGVIVEQGSHSELMKKEGIYFRLVNMQTAG
580 590 600 610 620 630
>>sp|P21449|MDR2_CRIGR MULTIDRUG RESISTANCE PROTEIN 2 (P (1276 aa)
initn: 605 init1: 341 opt: 342 Z-score: 396.1 expect() 2.2e-15
Smith-Waterman score: 595; 65.806% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.:::::.:::::::::::
sp|P21 QTVALVGKSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P21 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P21 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P21 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEKGIYCRLVMMQTRG
580 590 600 610 620 630
>>sp|P21448|MDR1_CRIGR MULTIDRUG RESISTANCE PROTEIN 1 (P (1276 aa)
initn: 605 init1: 341 opt: 342 Z-score: 396.1 expect() 2.2e-15
Smith-Waterman score: 595; 65.806% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.:::::.:::::::::::
sp|P21 QTVALVGNSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P21 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P21 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P21 LDKAREGRTTIVIAHRLSTVRNADIIAGFDGGVIVEQGNHEELMREKGIYFKLVMTQTAG
570 580 590 600 610 620
>>sp|P43245|MDR1_RAT MULTIDRUG RESISTANCE PROTEIN 1 (P-G (1277 aa)
initn: 629 init1: 341 opt: 342 Z-score: 396.1 expect() 2.2e-15
Smith-Waterman score: 595; 65.806% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. :::.:::..:.:::::.:::::::::::
sp|P43 QTVALVGNSGCGKSTTVQLLQRLYDPIEGEVSIDGQDIRTINVRYLREIIGVVSQEPVLF
420 430 440 450 460 470
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P43 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
480 490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::::
sp|P43 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P43 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMKEKGIYFKLVMTQTRG
580 590 600 610 620 630
>>sp|P21439|MDR3_HUMAN MULTIDRUG RESISTANCE PROTEIN 3 (P (1279 aa)
initn: 577 init1: 331 opt: 341 Z-score: 394.9 expect() 2.5e-15
Smith-Waterman score: 556; 63.871% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:. ::::.:::::::::::
sp|P21 QTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLF
430 440 450 460 470 480
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
.:::.::: ::: .::..::..:.::.:::.:::.::
sp|P21 STTIAENICYGRGNVTMDEIKKAVKEANAYEFIMKLP-----------------------
490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
:::.::::.::.:::::::::::::::::::::::::::::::::.:::. ::::
sp|P21 -----QKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P21 LDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMKKEGVYFKLVNMQTSG
580 590 600 610 620 630
>>sp|P23174|MDR3_CRIGR MULTIDRUG RESISTANCE PROTEIN 3 (P (1281 aa)
initn: 602 init1: 331 opt: 340 Z-score: 393.7 expect() 2.9e-15
Smith-Waterman score: 580; 65.806% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
: :::.:::..:.:::::.:::::::::::
sp|P23 QTVALVGNSGCGKTTTLQLLQRLYDPTEGTISIDGQDIRNFNVRYLREIIGVVSQEPVLF
430 440 450 460 470 480
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
.:::.::::::: .::.:::..:.::.:::.:::.::
sp|P23 STTIAENIRYGRGNVTMEEIKKAVKEANAYEFIMKLP-----------------------
490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
:::.::::.::.:::::::::::::::::::::::::::::::::.:::. ::::
sp|P23 -----QKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAEVQAA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P23 LDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMQKEGVYFKLVNMQTSG
580 590 600 610 620 630
>>sp|P08183|MDR1_HUMAN MULTIDRUG RESISTANCE PROTEIN 1 (P (1280 aa)
initn: 596 init1: 332 opt: 337 Z-score: 390.3 expect() 4.6e-15
Smith-Waterman score: 585; 63.871% identity in 155 aa overlap
10 20 30
6255 IFIDGHDIRSLNIRYLREMIGVVSQEPVLF
. .::.:::..:.:.:::.:::::::::::
sp|P08 QTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLF
430 440 450 460 470 480
40 50 60 70 80 90
6255 ATTITENIRYGRLDVTQEEIERATKESNAYDFIMNLPDVRPHLWLPYLSLAPSRSNANIY
::::.::::::: .::..:::.:.::.:::::::.::
sp|P08 ATTIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLP-----------------------
490 500 510
100 110 120 130 140 150
6255 IMISEQKFETLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESETIVQAA
.::.::::.::.:::::::::::::::::::::::::::::::::.:::..::.:
sp|P08 -----HKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVA
520 530 540 550 560 570
160 170 180 190 200 210
6255 LDKVQTQTRAEMMGNKETLLHCLLVYVSPFMVSGKDSQPTEALPEPPELQIAPTKACSRI
:::..
sp|P08 LDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAG
580 590 600 610 620 630
211 residues in 1 query sequences
26840295 residues in 74019 library sequences
Tcomplib (4 proc)[version 3.2t01 December 31, 1998]
start: Thu May 27 10:40:46 1999 done: Thu May 27 10:41:03 1999
Scan time: 28.470 Display time: 0.290
Function used was FASTA
[ GCG
| w2h
| Staden
| GeneExplorer ]
Last modified: Sun, 23 May 1999,
office@cbi.pku.edu.cn